Analysis of interatomic Contacts of Structural Units in PDB entry:
5YX3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YX3 entry

There are 2 chains in PDB entry 5YX3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 216
B
 ALA 1SER 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5YX3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 65Right-handed alpha
Helix 2
AA2
A
68 75Right-handed alpha
Helix 3
AA3
A
75 85Right-handed alpha
Helix 4
AA4
A
101 119Right-handed alpha
Helix 5
AA5
A
123 138Right-handed alpha
Helix 6
AA6
A
178 191Right-handed alpha
Helix 7
AA7
A
196 215Right-handed alpha
Helix 8
AA8
B
54 59Right-handed alpha
Helix 9
AA9
B
60 65Right-handed alpha
Helix 10
AB1
B
68 74Right-handed alpha
Helix 11
AB2
B
75 85Right-handed alpha
Helix 12
AB3
B
101 119Right-handed alpha
Helix 13
AB4
B
123 138Right-handed alpha
Helix 14
AB5
B
178 191Right-handed alpha
Helix 15
AB6
B
196 215Right-handed alpha
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There are 8 sheets in PDB entry 5YX3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
10 12anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
25 37anti-parallel
Strand 3
A
40 52anti-parallel
Strand 4
A
89 94anti-parallel
Strand 5
A
147 152anti-parallel
Strand 6
A
157 163anti-parallel
Strand 7
A
170 171anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
25 37anti-parallel
Strand 3
A
40 52anti-parallel
Strand 4
A
89 94anti-parallel
Strand 5
A
147 152anti-parallel
Strand 6
A
157 163anti-parallel
Strand 7
A
176 177anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
141 142anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
10 12anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
25 37anti-parallel
Strand 3
B
40 52anti-parallel
Strand 4
B
89 95anti-parallel
Strand 5
B
147 152anti-parallel
Strand 6
B
157 163anti-parallel
Strand 7
B
170 171anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
25 37anti-parallel
Strand 3
B
40 52anti-parallel
Strand 4
B
89 95anti-parallel
Strand 5
B
147 152anti-parallel
Strand 6
B
157 163anti-parallel
Strand 7
B
176 177anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
141 142anti-parallel
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