Analysis of interatomic Contacts of Structural Units in PDB entry:
5YX6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YX6 entry

There are 4 chains in PDB entry 5YX6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 5	LEU 391
B	ASN 5	LEU 391
C	ASN 5	ARG 393
D	ASN 5	ALA 392

There are 74 helices in PDB entry 5YX6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	34	Right-handed alpha
Helix 2	AA2	A	47	51	Right-handed 310
Helix 3	AA3	A	66	70	Right-handed 310
Helix 4	AA4	A	82	95	Right-handed alpha
Helix 5	AA5	A	106	111	Right-handed alpha
Helix 6	AA6	A	114	122	Right-handed alpha
Helix 7	AA7	A	145	153	Right-handed alpha
Helix 8	AA8	A	172	197	Right-handed alpha
Helix 9	AA9	A	206	214	Right-handed alpha
Helix 10	AB1	A	214	223	Right-handed alpha
Helix 11	AB2	A	267	278	Right-handed alpha
Helix 12	AB3	A	281	286	Right-handed alpha
Helix 13	AB4	A	291	298	Right-handed alpha
Helix 14	AB5	A	298	311	Right-handed alpha
Helix 15	AB6	A	314	325	Right-handed alpha
Helix 16	AB7	A	334	339	Right-handed alpha
Helix 17	AB8	A	341	347	Right-handed alpha
Helix 18	AB9	A	386	391	Right-handed alpha
Helix 19	AC1	B	22	34	Right-handed alpha
Helix 20	AC2	B	47	51	Right-handed 310
Helix 21	AC3	B	66	70	Right-handed 310
Helix 22	AC4	B	82	94	Right-handed alpha
Helix 23	AC5	B	106	111	Right-handed alpha
Helix 24	AC6	B	114	122	Right-handed alpha
Helix 25	AC7	B	138	142	Right-handed 310
Helix 26	AC8	B	145	153	Right-handed alpha
Helix 27	AC9	B	172	197	Right-handed alpha
Helix 28	AD1	B	206	214	Right-handed alpha
Helix 29	AD2	B	214	224	Right-handed alpha
Helix 30	AD3	B	267	278	Right-handed alpha
Helix 31	AD4	B	281	286	Right-handed alpha
Helix 32	AD5	B	291	298	Right-handed alpha
Helix 33	AD6	B	298	311	Right-handed alpha
Helix 34	AD7	B	314	325	Right-handed alpha
Helix 35	AD8	B	334	339	Right-handed alpha
Helix 36	AD9	B	341	347	Right-handed alpha
Helix 37	AE1	B	386	391	Right-handed alpha
Helix 38	AE2	C	22	34	Right-handed alpha
Helix 39	AE3	C	47	51	Right-handed 310
Helix 40	AE4	C	66	70	Right-handed 310
Helix 41	AE5	C	82	94	Right-handed alpha
Helix 42	AE6	C	106	111	Right-handed alpha
Helix 43	AE7	C	114	120	Right-handed alpha
Helix 44	AE8	C	137	141	Right-handed 310
Helix 45	AE9	C	145	153	Right-handed alpha
Helix 46	AF1	C	172	197	Right-handed alpha
Helix 47	AF2	C	206	214	Right-handed alpha
Helix 48	AF3	C	214	223	Right-handed alpha
Helix 49	AF4	C	267	278	Right-handed alpha
Helix 50	AF5	C	280	284	Right-handed 310
Helix 51	AF6	C	291	298	Right-handed alpha
Helix 52	AF7	C	298	311	Right-handed alpha
Helix 53	AF8	C	314	325	Right-handed alpha
Helix 54	AF9	C	334	339	Right-handed alpha
Helix 55	AG1	C	341	347	Right-handed alpha
Helix 56	AG2	C	386	391	Right-handed alpha
Helix 57	AG3	D	22	34	Right-handed alpha
Helix 58	AG4	D	47	51	Right-handed 310
Helix 59	AG5	D	66	70	Right-handed 310
Helix 60	AG6	D	82	94	Right-handed alpha
Helix 61	AG7	D	106	111	Right-handed alpha
Helix 62	AG8	D	114	122	Right-handed alpha
Helix 63	AG9	D	145	153	Right-handed alpha
Helix 64	AH1	D	172	197	Right-handed alpha
Helix 65	AH2	D	206	214	Right-handed alpha
Helix 66	AH3	D	214	223	Right-handed alpha
Helix 67	AH4	D	267	278	Right-handed alpha
Helix 68	AH5	D	281	286	Right-handed alpha
Helix 69	AH6	D	291	298	Right-handed alpha
Helix 70	AH7	D	298	311	Right-handed alpha
Helix 71	AH8	D	314	325	Right-handed alpha
Helix 72	AH9	D	334	339	Right-handed alpha
Helix 73	AI1	D	341	347	Right-handed alpha
Helix 74	AI2	D	386	391	Right-handed alpha

There are 13 sheets in PDB entry 5YX6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	77	first strand
Strand 2	A	37	42	parallel
Strand 3	A	14	17	parallel
Strand 4	A	98	101	parallel
Strand 5	A	126	131	parallel
Strand 6	A	201	205	parallel
Strand 7	B	368	369	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	56	first strand
Strand 2	A	59	62	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	255	first strand
Strand 2	A	260	264	anti-parallel
Strand 3	A	328	331	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	353	first strand
Strand 2	A	360	363	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	369	first strand
Strand 2	B	201	205	anti-parallel
Strand 3	B	126	131	parallel
Strand 4	B	98	101	parallel
Strand 5	B	14	17	parallel
Strand 6	B	37	42	parallel
Strand 7	B	74	77	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	255	first strand
Strand 2	B	260	264	anti-parallel
Strand 3	B	328	331	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	353	first strand
Strand 2	B	360	363	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	77	first strand
Strand 2	C	37	42	parallel
Strand 3	C	14	17	parallel
Strand 4	C	98	101	parallel
Strand 5	C	126	131	parallel
Strand 6	C	201	205	parallel
Strand 7	D	368	369	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	255	first strand
Strand 2	C	260	264	anti-parallel
Strand 3	C	328	331	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	352	first strand
Strand 2	C	361	363	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	369	first strand
Strand 2	D	201	205	anti-parallel
Strand 3	D	126	131	parallel
Strand 4	D	98	101	parallel
Strand 5	D	14	17	parallel
Strand 6	D	37	42	parallel
Strand 7	D	74	77	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	255	first strand
Strand 2	D	260	264	anti-parallel
Strand 3	D	328	331	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	353	first strand
Strand 2	D	360	363	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YX6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YX6