Analysis of interatomic Contacts of Structural Units in PDB entry:
5YXA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YXA entry

There are 4 chains in PDB entry 5YXA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5ALA 181
B
 SER 5ALA 181
C
 SER 5ALA 181
D
 SER 5ALA 181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5YXA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
56 60Right-handed 310
Helix 3
AA3
A
66 70Right-handed 310
Helix 4
AA4
A
73 77Right-handed 310
Helix 5
AA5
B
9 13Right-handed 310
Helix 6
AA6
B
56 60Right-handed 310
Helix 7
AA7
B
66 70Right-handed 310
Helix 8
AA8
B
73 77Right-handed 310
Helix 9
AA9
B
170 174Right-handed 310
Helix 10
AB1
C
9 13Right-handed 310
Helix 11
AB2
C
56 60Right-handed 310
Helix 12
AB3
C
66 70Right-handed 310
Helix 13
AB4
C
73 77Right-handed 310
Helix 14
AB5
C
170 174Right-handed 310
Helix 15
AB6
D
9 13Right-handed 310
Helix 16
AB7
D
56 60Right-handed 310
Helix 17
AB8
D
66 70Right-handed 310
Helix 18
AB9
D
73 77Right-handed 310
Helix 19
AC1
D
170 174Right-handed 310
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There are 8 sheets in PDB entry 5YXA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
21 26anti-parallel
Strand 3
A
29 36anti-parallel
Strand 4
A
39 47anti-parallel
Strand 5
A
102 106anti-parallel
Strand 6
A
150 154anti-parallel
Strand 7
A
157 160anti-parallel
Strand 8
A
127 128anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 116first strand
Strand 2
A
139 142parallel
Strand 3
A
165 166anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
21 26anti-parallel
Strand 3
B
29 36anti-parallel
Strand 4
B
39 47anti-parallel
Strand 5
B
102 106anti-parallel
Strand 6
B
150 154anti-parallel
Strand 7
B
157 159anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 116first strand
Strand 2
B
139 142parallel
Strand 3
B
165 166anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 18first strand
Strand 2
C
21 26anti-parallel
Strand 3
C
29 36anti-parallel
Strand 4
C
39 47anti-parallel
Strand 5
C
102 106anti-parallel
Strand 6
C
150 154anti-parallel
Strand 7
C
157 159anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 116first strand
Strand 2
C
140 142parallel
Strand 3
C
165 166anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 18first strand
Strand 2
D
21 26anti-parallel
Strand 3
D
29 36anti-parallel
Strand 4
D
39 47anti-parallel
Strand 5
D
102 106anti-parallel
Strand 6
D
150 154anti-parallel
Strand 7
D
157 159anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
113 116first strand
Strand 2
D
139 142parallel
Strand 3
D
165 166anti-parallel
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