Analysis of interatomic Contacts of Structural Units in PDB entry:
5YXC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YXC entry

There are 2 chains in PDB entry 5YXC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 30HIS 216
B
 GLY 30HIS 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5YXC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 42Right-handed alpha
Helix 2
AA2
A
46 50Right-handed 310
Helix 3
AA3
A
54 59Right-handed 310
Helix 4
AA4
A
65 71Right-handed alpha
Helix 5
AA5
A
74 85Right-handed alpha
Helix 6
AA6
A
89 102Right-handed alpha
Helix 7
AA7
A
185 191Right-handed alpha
Helix 8
AA8
A
205 215Right-handed alpha
Helix 9
AA9
B
34 42Right-handed alpha
Helix 10
AB1
B
46 50Right-handed 310
Helix 11
AB2
B
54 59Right-handed 310
Helix 12
AB3
B
65 71Right-handed alpha
Helix 13
AB4
B
74 85Right-handed alpha
Helix 14
AB5
B
89 102Right-handed alpha
Helix 15
AB6
B
185 191Right-handed alpha
Helix 16
AB7
B
205 215Right-handed alpha
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There are 2 sheets in PDB entry 5YXC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
114 119anti-parallel
Strand 3
A
105 111anti-parallel
Strand 4
A
60 64anti-parallel
Strand 5
A
198 201anti-parallel
Strand 6
A
177 182anti-parallel
Strand 7
A
161 165anti-parallel
Strand 8
A
143 150anti-parallel
Strand 9
A
129 137anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 127first strand
Strand 2
B
114 119anti-parallel
Strand 3
B
105 111anti-parallel
Strand 4
B
60 64anti-parallel
Strand 5
B
198 201anti-parallel
Strand 6
B
177 182anti-parallel
Strand 7
B
161 165anti-parallel
Strand 8
B
143 150anti-parallel
Strand 9
B
129 137anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il