Analysis of interatomic Contacts of Structural Units in PDB entry:
5YXG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YXG entry

There are 4 chains in PDB entry 5YXG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 184	TYR 243
A	THR 245	PHE 274
A	SER 276	ASN 481
B	LEU 177	LEU 486

There are 9 helices in PDB entry 5YXG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	264	269	Right-handed alpha
Helix 2	AA2	A	281	286	Right-handed alpha
Helix 3	AA3	A	301	311	Right-handed alpha
Helix 4	AA4	A	414	418	Right-handed 310
Helix 5	AA5	B	264	269	Right-handed alpha
Helix 6	AA6	B	281	286	Right-handed alpha
Helix 7	AA7	B	301	311	Right-handed alpha
Helix 8	AA8	B	414	418	Right-handed 310
Helix 9	AA9	B	481	483	Right-handed 310

There are 12 sheets in PDB entry 5YXG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	185	191	anti-parallel
Strand 3	A	209	217	anti-parallel
Strand 4	A	316	325	anti-parallel
Strand 5	A	249	259	anti-parallel
Strand 6	A	262	263	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	355	357	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	276	first strand
Strand 2	A	290	295	anti-parallel
Strand 3	A	239	244	anti-parallel
Strand 4	A	338	342	anti-parallel
Strand 5	A	349	352	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	431	436	parallel
Strand 3	A	359	367	anti-parallel
Strand 4	A	473	479	parallel
Strand 5	A	452	454	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	412	first strand
Strand 2	A	388	395	anti-parallel
Strand 3	A	378	385	anti-parallel
Strand 4	A	421	422	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	412	first strand
Strand 2	A	388	395	anti-parallel
Strand 3	A	378	385	anti-parallel
Strand 4	A	439	447	anti-parallel
Strand 5	A	458	463	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	184	191	anti-parallel
Strand 3	B	209	217	anti-parallel
Strand 4	B	316	325	anti-parallel
Strand 5	B	249	259	anti-parallel
Strand 6	B	262	263	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	355	357	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	276	first strand
Strand 2	B	290	295	anti-parallel
Strand 3	B	239	244	anti-parallel
Strand 4	B	338	342	anti-parallel
Strand 5	B	349	352	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	404	first strand
Strand 2	B	431	436	parallel
Strand 3	B	359	367	anti-parallel
Strand 4	B	473	479	parallel
Strand 5	B	452	453	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	412	first strand
Strand 2	B	388	395	anti-parallel
Strand 3	B	378	385	anti-parallel
Strand 4	B	421	422	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	412	first strand
Strand 2	B	388	395	anti-parallel
Strand 3	B	378	385	anti-parallel
Strand 4	B	439	447	anti-parallel
Strand 5	B	458	463	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YXG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YXG