Analysis of interatomic Contacts of Structural Units in PDB entry:
5YXJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YXJ entry

There are 4 chains in PDB entry 5YXJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 244VAL 471
B
 GLU 244VAL 471
C
 GLU 745LYS 755
D
 GLU 745LYS 755
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5YXJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
246 263Right-handed alpha
Helix 2
AA2
A
266 276Right-handed alpha
Helix 3
AA3
A
279 305Right-handed alpha
Helix 4
AA4
A
307 311Right-handed 310
Helix 5
AA5
A
312 338Right-handed alpha
Helix 6
AA6
A
343 353Right-handed alpha
Helix 7
AA7
A
358 374Right-handed alpha
Helix 8
AA8
A
378 391Right-handed alpha
Helix 9
AA9
A
400 423Right-handed alpha
Helix 10
AB1
A
428 442Right-handed alpha
Helix 11
AB2
A
442 453Right-handed alpha
Helix 12
AB3
A
453 458Right-handed alpha
Helix 13
AB4
A
462 469Right-handed alpha
Helix 14
AB5
B
246 261Right-handed alpha
Helix 15
AB6
B
266 276Right-handed alpha
Helix 16
AB7
B
279 303Right-handed alpha
Helix 17
AB8
B
307 311Right-handed 310
Helix 18
AB9
B
313 338Right-handed alpha
Helix 19
AC1
B
345 354Right-handed alpha
Helix 20
AC2
B
358 375Right-handed alpha
Helix 21
AC3
B
378 391Right-handed alpha
Helix 22
AC4
B
400 423Right-handed alpha
Helix 23
AC5
B
428 442Right-handed alpha
Helix 24
AC6
B
442 455Right-handed alpha
Helix 25
AC7
B
462 470Right-handed alpha
Helix 26
AC8
C
746 755Right-handed alpha
Helix 27
AC9
D
746 755Right-handed alpha
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There are no sheets in PDB entry 5YXJ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il