Analysis of interatomic Contacts of Structural Units in PDB entry:
5YXL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YXL entry

There are 4 chains in PDB entry 5YXL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3VAL 228
B
 ALA 2LEU 8
C
 THR 3VAL 228
D
 ALA 2ASP 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5YXL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 19Right-handed alpha
Helix 2
AA2
A
23 33Right-handed alpha
Helix 3
AA3
A
36 61Right-handed alpha
Helix 4
AA4
A
64 68Right-handed 310
Helix 5
AA5
A
69 95Right-handed alpha
Helix 6
AA6
A
103 111Right-handed alpha
Helix 7
AA7
A
115 132Right-handed alpha
Helix 8
AA8
A
135 148Right-handed alpha
Helix 9
AA9
A
157 180Right-handed alpha
Helix 10
AB1
A
184 199Right-handed alpha
Helix 11
AB2
A
199 210Right-handed alpha
Helix 12
AB3
A
210 215Right-handed alpha
Helix 13
AB4
A
219 226Right-handed alpha
Helix 14
AB5
B
3 8Right-handed alpha
Helix 15
AB6
C
4 18Right-handed alpha
Helix 16
AB7
C
23 33Right-handed alpha
Helix 17
AB8
C
36 61Right-handed alpha
Helix 18
AB9
C
64 68Right-handed 310
Helix 19
AC1
C
69 94Right-handed alpha
Helix 20
AC2
C
103 110Right-handed alpha
Helix 21
AC3
C
115 132Right-handed alpha
Helix 22
AC4
C
135 148Right-handed alpha
Helix 23
AC5
C
157 180Right-handed alpha
Helix 24
AC6
C
185 198Right-handed alpha
Helix 25
AC7
C
199 208Right-handed alpha
Helix 26
AC8
C
219 226Right-handed alpha
Helix 27
AC9
D
3 9Right-handed alpha
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There are no sheets in PDB entry 5YXL
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il