Analysis of interatomic Contacts of Structural Units in PDB entry:
5YXO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YXO entry

There is 1 chain in PDB entry 5YXO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 37ASN 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5YXO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 90Right-handed alpha
Helix 2
AA2
A
91 102Right-handed alpha
Helix 3
AA3
A
103 106Right-handed 310
Helix 4
AA4
A
264 269Right-handed alpha
Helix 5
AA5
A
279 286Right-handed alpha
Helix 6
AA6
A
297 299Right-handed 310
Helix 7
AA7
A
301 311Right-handed alpha
Helix 8
AA8
A
414 418Right-handed 310
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There are 9 sheets in PDB entry 5YXO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 131first strand
Strand 2
A
38 44anti-parallel
Strand 3
A
174 177parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
73 78anti-parallel
Strand 3
A
140 148anti-parallel
Strand 4
A
159 161anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
73 78anti-parallel
Strand 3
A
140 148anti-parallel
Strand 4
A
198 199anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 191first strand
Strand 2
A
209 217anti-parallel
Strand 3
A
316 325anti-parallel
Strand 4
A
249 259anti-parallel
Strand 5
A
262 263anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 204first strand
Strand 2
A
355 367parallel
Strand 3
A
431 436anti-parallel
Strand 4
A
403 404parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
355 367anti-parallel
Strand 3
A
473 479parallel
Strand 4
A
452 454anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 276first strand
Strand 2
A
290 295anti-parallel
Strand 3
A
239 244anti-parallel
Strand 4
A
338 342anti-parallel
Strand 5
A
348 352anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 412first strand
Strand 2
A
388 395anti-parallel
Strand 3
A
378 385anti-parallel
Strand 4
A
421 422anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 412first strand
Strand 2
A
388 395anti-parallel
Strand 3
A
378 385anti-parallel
Strand 4
A
439 447anti-parallel
Strand 5
A
458 463anti-parallel
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