Analysis of interatomic Contacts of Structural Units in PDB entry:
5YXU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YXU entry

There are 10 chains in PDB entry 5YXU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	GLN 3	ASN 192
G	ALA 3	ALA 241
A	ALA 2	ASN 192
B	ALA 1	ALA 242
C	GLY 2	GLU 276
D	GLY 2	MET 101
E	GLY 2	ALA 277
H	ILE 3	MET 101
I	LYS 1	VAL 10
J	LYS 1	VAL 10

There are 25 helices in PDB entry 5YXU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	84	88	Right-handed 310
Helix 2	AA2	F	166	169	Right-handed 310
Helix 3	AA3	G	83	87	Right-handed 310
Helix 4	AA4	G	114	118	Right-handed 310
Helix 5	AA5	G	129	137	Right-handed alpha
Helix 6	AA6	G	196	200	Right-handed alpha
Helix 7	AA7	A	84	88	Right-handed 310
Helix 8	AA8	A	166	169	Right-handed 310
Helix 9	AA9	B	83	87	Right-handed 310
Helix 10	AB1	B	114	118	Right-handed 310
Helix 11	AB2	B	129	137	Right-handed alpha
Helix 12	AB3	B	196	200	Right-handed alpha
Helix 13	AB4	C	50	54	Right-handed 310
Helix 14	AB5	C	57	86	Right-handed alpha
Helix 15	AB6	C	139	152	Right-handed alpha
Helix 16	AB7	C	152	163	Right-handed alpha
Helix 17	AB8	C	163	176	Right-handed alpha
Helix 18	AB9	C	176	181	Right-handed alpha
Helix 19	AC1	C	254	256	Right-handed 310
Helix 20	AC2	E	50	55	Right-handed alpha
Helix 21	AC3	E	57	86	Right-handed alpha
Helix 22	AC4	E	139	152	Right-handed alpha
Helix 23	AC5	E	152	163	Right-handed alpha
Helix 24	AC6	E	163	176	Right-handed alpha
Helix 25	AC7	E	176	181	Right-handed alpha

There are 38 sheets in PDB entry 5YXU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	6	first strand
Strand 2	F	25	26	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	15	first strand
Strand 2	F	107	112	parallel
Strand 3	F	89	96	anti-parallel
Strand 4	F	34	40	anti-parallel
Strand 5	F	47	53	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	15	first strand
Strand 2	F	107	112	parallel
Strand 3	F	89	96	anti-parallel
Strand 4	F	101	103	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	22	first strand
Strand 2	F	75	80	anti-parallel
Strand 3	F	65	70	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	121	124	first strand
Strand 2	F	136	139	anti-parallel
Strand 3	F	170	178	anti-parallel
Strand 4	F	156	157	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	121	124	first strand
Strand 2	F	136	139	anti-parallel
Strand 3	F	170	178	anti-parallel
Strand 4	F	161	165	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	8	first strand
Strand 2	G	20	26	anti-parallel
Strand 3	G	77	79	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	107	110	parallel
Strand 3	G	88	95	anti-parallel
Strand 4	G	33	38	anti-parallel
Strand 5	G	44	50	anti-parallel
Strand 6	G	57	58	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	107	110	parallel
Strand 3	G	88	95	anti-parallel
Strand 4	G	101	103	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	126	first strand
Strand 2	G	138	148	anti-parallel
Strand 3	G	186	195	anti-parallel
Strand 4	G	168	170	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	126	first strand
Strand 2	G	138	148	anti-parallel
Strand 3	G	186	195	anti-parallel
Strand 4	G	175	176	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	162	164	first strand
Strand 2	G	153	159	anti-parallel
Strand 3	G	205	212	anti-parallel
Strand 4	G	231	238	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	25	27	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	15	first strand
Strand 2	A	107	112	parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	34	40	anti-parallel
Strand 5	A	47	53	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	15	first strand
Strand 2	A	107	112	parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	101	103	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	75	80	anti-parallel
Strand 3	A	65	70	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	170	178	anti-parallel
Strand 4	A	156	157	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	170	178	anti-parallel
Strand 4	A	161	165	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	20	25	anti-parallel
Strand 3	B	77	79	anti-parallel
Strand 4	B	66	67	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	15	first strand
Strand 2	B	107	112	parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	44	50	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	15	first strand
Strand 2	B	107	112	parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	101	103	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	126	first strand
Strand 2	B	138	148	anti-parallel
Strand 3	B	186	195	anti-parallel
Strand 4	B	168	170	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	126	first strand
Strand 2	B	138	148	anti-parallel
Strand 3	B	186	195	anti-parallel
Strand 4	B	175	176	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	164	first strand
Strand 2	B	153	159	anti-parallel
Strand 3	B	205	212	anti-parallel
Strand 4	B	231	238	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	32	38	anti-parallel
Strand 3	C	22	29	anti-parallel
Strand 4	C	4	13	anti-parallel
Strand 5	C	95	104	anti-parallel
Strand 6	C	110	119	anti-parallel
Strand 7	C	122	127	anti-parallel
Strand 8	C	134	136	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	193	first strand
Strand 2	C	199	209	anti-parallel
Strand 3	C	242	251	anti-parallel
Strand 4	C	229	231	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	193	first strand
Strand 2	C	199	209	anti-parallel
Strand 3	C	242	251	anti-parallel
Strand 4	C	235	236	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	224	first strand
Strand 2	C	215	220	anti-parallel
Strand 3	C	258	263	anti-parallel
Strand 4	C	271	273	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	13	first strand
Strand 2	D	23	32	anti-parallel
Strand 3	D	64	72	anti-parallel
Strand 4	D	52	53	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	13	first strand
Strand 2	D	23	32	anti-parallel
Strand 3	D	64	72	anti-parallel
Strand 4	D	57	58	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	38	43	anti-parallel
Strand 3	D	80	85	anti-parallel
Strand 4	D	93	96	anti-parallel

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There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	48	first strand
Strand 2	E	32	38	anti-parallel
Strand 3	E	22	29	anti-parallel
Strand 4	E	4	13	anti-parallel
Strand 5	E	95	104	anti-parallel
Strand 6	E	110	119	anti-parallel
Strand 7	E	122	127	anti-parallel
Strand 8	E	134	136	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	193	first strand
Strand 2	E	200	209	anti-parallel
Strand 3	E	242	250	anti-parallel
Strand 4	E	230	231	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	193	first strand
Strand 2	E	200	209	anti-parallel
Strand 3	E	242	250	anti-parallel
Strand 4	E	235	236	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	215	219	first strand
Strand 2	E	259	263	anti-parallel
Strand 3	E	271	273	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	13	first strand
Strand 2	H	23	32	anti-parallel
Strand 3	H	64	72	anti-parallel
Strand 4	H	52	53	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	13	first strand
Strand 2	H	23	32	anti-parallel
Strand 3	H	64	72	anti-parallel
Strand 4	H	57	58	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	43	first strand
Strand 2	H	80	85	anti-parallel
Strand 3	H	93	96	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YXU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YXU