Analysis of interatomic Contacts of Structural Units in PDB entry:
5YXY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YXY entry

There are 6 chains in PDB entry 5YXY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 5	ARG 427
B	TYR 5	ALA 426
C	TYR 5	ALA 426
D	HIS 2	LYS 135
E	HIS 2	GLU 136
F	HIS 2	LYS 135

There are 54 helices in PDB entry 5YXY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	49	Right-handed alpha
Helix 2	AA2	A	53	61	Right-handed alpha
Helix 3	AA3	A	62	64	Right-handed 310
Helix 4	AA4	A	65	67	Right-handed 310
Helix 5	AA5	A	68	85	Right-handed alpha
Helix 6	AA6	A	89	121	Right-handed alpha
Helix 7	AA7	A	133	155	Right-handed alpha
Helix 8	AA8	A	174	201	Right-handed alpha
Helix 9	AA9	A	271	280	Right-handed alpha
Helix 10	AB1	A	281	283	Right-handed 310
Helix 11	AB2	A	285	294	Right-handed alpha
Helix 12	AB3	A	304	329	Right-handed alpha
Helix 13	AB4	A	376	388	Right-handed alpha
Helix 14	AB5	A	404	415	Right-handed alpha
Helix 15	AB6	B	42	49	Right-handed alpha
Helix 16	AB7	B	53	61	Right-handed alpha
Helix 17	AB8	B	62	64	Right-handed 310
Helix 18	AB9	B	65	67	Right-handed 310
Helix 19	AC1	B	68	85	Right-handed alpha
Helix 20	AC2	B	89	121	Right-handed alpha
Helix 21	AC3	B	133	155	Right-handed alpha
Helix 22	AC4	B	174	201	Right-handed alpha
Helix 23	AC5	B	271	279	Right-handed alpha
Helix 24	AC6	B	280	283	Right-handed 310
Helix 25	AC7	B	285	294	Right-handed alpha
Helix 26	AC8	B	303	331	Right-handed alpha
Helix 27	AC9	B	376	391	Right-handed alpha
Helix 28	AD1	B	402	415	Right-handed alpha
Helix 29	AD2	C	42	49	Right-handed alpha
Helix 30	AD3	C	53	61	Right-handed alpha
Helix 31	AD4	C	62	64	Right-handed 310
Helix 32	AD5	C	65	67	Right-handed 310
Helix 33	AD6	C	68	85	Right-handed alpha
Helix 34	AD7	C	89	121	Right-handed alpha
Helix 35	AD8	C	133	155	Right-handed alpha
Helix 36	AD9	C	174	201	Right-handed alpha
Helix 37	AE1	C	271	280	Right-handed alpha
Helix 38	AE2	C	281	283	Right-handed 310
Helix 39	AE3	C	285	294	Right-handed alpha
Helix 40	AE4	C	304	330	Right-handed alpha
Helix 41	AE5	C	376	397	Right-handed alpha
Helix 42	AE6	C	402	414	Right-handed alpha
Helix 43	AE7	D	3	21	Right-handed alpha
Helix 44	AE8	D	40	52	Right-handed alpha
Helix 45	AE9	D	82	87	Right-handed alpha
Helix 46	AF1	D	103	107	Right-handed 310
Helix 47	AF2	E	3	21	Right-handed alpha
Helix 48	AF3	E	40	52	Right-handed alpha
Helix 49	AF4	E	83	85	Right-handed 310
Helix 50	AF5	E	103	108	Right-handed alpha
Helix 51	AF6	F	3	21	Right-handed alpha
Helix 52	AF7	F	40	53	Right-handed alpha
Helix 53	AF8	F	83	85	Right-handed 310
Helix 54	AF9	F	102	108	Right-handed alpha

There are 18 sheets in PDB entry 5YXY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	11	first strand
Strand 2	D	126	134	anti-parallel
Strand 3	D	25	34	anti-parallel
Strand 4	D	61	67	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	37	first strand
Strand 2	A	21	26	anti-parallel
Strand 3	A	422	425	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	168	169	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	249	first strand
Strand 2	A	260	262	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	352	first strand
Strand 2	A	357	365	anti-parallel
Strand 3	A	368	375	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	E	126	134	anti-parallel
Strand 3	E	25	34	anti-parallel
Strand 4	E	61	67	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	36	first strand
Strand 2	B	22	25	anti-parallel
Strand 3	B	422	425	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	168	169	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	347	352	anti-parallel
Strand 3	B	357	365	anti-parallel
Strand 4	B	368	375	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	12	first strand
Strand 2	F	126	134	anti-parallel
Strand 3	F	25	34	anti-parallel
Strand 4	F	61	67	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	36	first strand
Strand 2	C	22	25	anti-parallel
Strand 3	C	422	425	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	168	169	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	236	first strand
Strand 2	C	220	223	anti-parallel
Strand 3	C	269	270	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	249	first strand
Strand 2	C	260	262	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	352	first strand
Strand 2	C	357	365	anti-parallel
Strand 3	C	368	375	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	81	first strand
Strand 2	D	70	73	anti-parallel
Strand 3	D	118	122	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	81	first strand
Strand 2	E	70	73	anti-parallel
Strand 3	E	118	122	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	81	first strand
Strand 2	F	70	73	anti-parallel
Strand 3	F	119	122	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YXY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YXY