Analysis of interatomic Contacts of Structural Units in PDB entry:
5YY0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YY0 entry

There are 2 chains in PDB entry 5YY0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 5ALA 426
B
 HIS 2LYS 135
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5YY0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 49Right-handed alpha
Helix 2
AA2
A
53 61Right-handed alpha
Helix 3
AA3
A
62 64Right-handed 310
Helix 4
AA4
A
65 67Right-handed 310
Helix 5
AA5
A
68 85Right-handed alpha
Helix 6
AA6
A
89 122Right-handed alpha
Helix 7
AA7
A
133 155Right-handed alpha
Helix 8
AA8
A
174 202Right-handed alpha
Helix 9
AA9
A
252 256Right-handed 310
Helix 10
AB1
A
263 266Right-handed 310
Helix 11
AB2
A
271 279Right-handed alpha
Helix 12
AB3
A
285 294Right-handed alpha
Helix 13
AB4
A
304 329Right-handed alpha
Helix 14
AB5
A
376 388Right-handed alpha
Helix 15
AB6
A
404 414Right-handed alpha
Helix 16
AB7
B
3 22Right-handed alpha
Helix 17
AB8
B
40 52Right-handed alpha
Helix 18
AB9
B
82 87Right-handed alpha
Helix 19
AC1
B
103 108Right-handed alpha
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There are 5 sheets in PDB entry 5YY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 12first strand
Strand 2
B
126 134anti-parallel
Strand 3
B
25 34anti-parallel
Strand 4
B
61 67parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
22 25anti-parallel
Strand 3
A
422 425parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
345 353anti-parallel
Strand 3
A
356 365anti-parallel
Strand 4
A
368 375anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
259 261anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
70 73anti-parallel
Strand 3
B
118 122anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il