Analysis of interatomic Contacts of Structural Units in PDB entry:
5YY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YY2 entry

There is 1 chain in PDB entry 5YY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 42PHE 639
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5YY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 52Right-handed alpha
Helix 2
AA2
A
66 82Right-handed alpha
Helix 3
AA3
A
86 100Right-handed alpha
Helix 4
AA4
A
103 117Right-handed alpha
Helix 5
AA5
A
118 124Right-handed alpha
Helix 6
AA6
A
130 138Right-handed 310
Helix 7
AA7
A
160 162Right-handed 310
Helix 8
AA8
A
163 169Right-handed alpha
Helix 9
AA9
A
169 183Right-handed alpha
Helix 10
AB1
A
199 222Right-handed alpha
Helix 11
AB2
A
277 295Right-handed alpha
Helix 12
AB3
A
312 322Right-handed alpha
Helix 13
AB4
A
324 330Right-handed alpha
Helix 14
AB5
A
338 343Right-handed alpha
Helix 15
AB6
A
344 357Right-handed alpha
Helix 16
AB7
A
382 399Right-handed alpha
Helix 17
AB8
A
442 446Right-handed 310
Helix 18
AB9
A
489 491Right-handed 310
Helix 19
AC1
A
493 497Right-handed 310
Helix 20
AC2
A
520 522Right-handed 310
Helix 21
AC3
A
529 533Right-handed 310
Helix 22
AC4
A
535 539Right-handed 310
Helix 23
AC5
A
600 605Right-handed alpha
Helix 24
AC6
A
612 617Right-handed alpha
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There are 3 sheets in PDB entry 5YY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
306 307anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 421first strand
Strand 2
A
457 465anti-parallel
Strand 3
A
513 518anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 454first strand
Strand 2
A
433 439anti-parallel
Strand 3
A
626 634parallel
Strand 4
A
561 570anti-parallel
Strand 5
A
477 487anti-parallel
Strand 6
A
498 507anti-parallel
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