Analysis of interatomic Contacts of Structural Units in PDB entry:
5YY5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YY5 entry

There are 6 chains in PDB entry 5YY5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 380	LEU 588
B	GLY 380	LEU 588
H	GLU 1	SER 107
L	GLY -1	LEU 110
C	GLY 1	THR 105
D	LEU 4	THR 108

There are 19 helices in PDB entry 5YY5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	385	390	Right-handed 310
Helix 2	AA2	A	395	399	Right-handed 310
Helix 3	AA3	A	410	417	Right-handed alpha
Helix 4	AA4	A	429	434	Right-handed alpha
Helix 5	AA5	A	449	456	Right-handed 310
Helix 6	AA6	A	462	468	Right-handed alpha
Helix 7	AA7	A	524	528	Right-handed 310
Helix 8	AA8	A	546	550	Right-handed 310
Helix 9	AA9	B	385	390	Right-handed 310
Helix 10	AB1	B	395	399	Right-handed 310
Helix 11	AB2	B	410	417	Right-handed alpha
Helix 12	AB3	B	429	434	Right-handed alpha
Helix 13	AB4	B	449	456	Right-handed 310
Helix 14	AB5	B	462	468	Right-handed alpha
Helix 15	AB6	B	524	528	Right-handed 310
Helix 16	AB7	B	546	550	Right-handed 310
Helix 17	AB8	H	28	32	Right-handed 310
Helix 18	AB9	H	83	87	Right-handed 310
Helix 19	AC1	C	28	32	Right-handed 310

There are 17 sheets in PDB entry 5YY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	404	first strand
Strand 2	A	440	447	anti-parallel
Strand 3	A	568	576	anti-parallel
Strand 4	A	477	483	anti-parallel
Strand 5	A	422	426	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	409	first strand
Strand 2	A	584	586	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	506	first strand
Strand 2	A	553	562	anti-parallel
Strand 3	A	540	544	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	404	first strand
Strand 2	B	440	447	anti-parallel
Strand 3	B	568	576	anti-parallel
Strand 4	B	477	483	anti-parallel
Strand 5	B	419	426	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	409	first strand
Strand 2	B	584	586	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	515	first strand
Strand 2	B	497	506	anti-parallel
Strand 3	B	553	561	anti-parallel
Strand 4	B	540	544	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	68	72	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	103	106	parallel
Strand 3	H	88	93	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	18	23	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	67	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	12	first strand
Strand 2	L	108	109	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	49	first strand
Strand 2	L	35	39	anti-parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	98	101	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	49	first strand
Strand 2	L	35	39	anti-parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	105	106	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	45	51	anti-parallel
Strand 3	C	34	39	anti-parallel
Strand 4	C	88	93	anti-parallel
Strand 5	C	102	104	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	71	76	anti-parallel
Strand 4	D	63	67	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	49	first strand
Strand 2	D	34	39	anti-parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	98	101	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	49	first strand
Strand 2	D	34	39	anti-parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	105	106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YY5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YY5