Analysis of interatomic Contacts of Structural Units in PDB entry:
5YY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YY9 entry

There are 6 chains in PDB entry 5YY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 137PRO 283
B
 ASP 125GLY 284
C
 ILE 118ARG 125
C
 GLN 127PRO 129
D
 ILE 118ARG 125
D
 GLN 127GLN 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5YY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
200 202Right-handed 310
Helix 2
AA2
A
213 217Right-handed 310
Helix 3
AA3
B
191 195Right-handed 310
Helix 4
AA4
B
213 217Right-handed 310
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There are 4 sheets in PDB entry 5YY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 199first strand
Strand 2
A
181 188anti-parallel
Strand 3
A
151 162anti-parallel
Strand 4
A
141 144anti-parallel
Strand 5
A
204 206anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 227first strand
Strand 2
A
237 248anti-parallel
Strand 3
A
253 260anti-parallel
Strand 4
A
265 271anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 199first strand
Strand 2
B
183 188anti-parallel
Strand 3
B
151 160anti-parallel
Strand 4
B
140 144anti-parallel
Strand 5
B
204 206anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 271first strand
Strand 2
B
253 259anti-parallel
Strand 3
B
237 248anti-parallel
Strand 4
B
222 227anti-parallel
Strand 5
B
278 279anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il