Analysis of interatomic Contacts of Structural Units in PDB entry:
5YYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YYC entry

There are 2 chains in PDB entry 5YYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 368
C
 MET 1GLU 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5YYC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 28Right-handed alpha
Helix 2
AA2
A
40 46Right-handed alpha
Helix 3
AA3
A
48 59Right-handed alpha
Helix 4
AA4
A
68 78Right-handed alpha
Helix 5
AA5
A
91 93Right-handed 310
Helix 6
AA6
A
94 101Right-handed alpha
Helix 7
AA7
A
109 121Right-handed alpha
Helix 8
AA8
A
144 157Right-handed alpha
Helix 9
AA9
A
179 198Right-handed alpha
Helix 10
AB1
A
209 216Right-handed alpha
Helix 11
AB2
A
217 220Right-handed 310
Helix 12
AB3
A
227 232Right-handed 310
Helix 13
AB4
A
268 272Right-handed 310
Helix 14
AB5
A
287 291Right-handed 310
Helix 15
AB6
A
293 297Right-handed 310
Helix 16
AB7
A
339 347Right-handed alpha
Helix 17
AB8
A
350 358Right-handed alpha
Helix 18
AB9
C
14 29Right-handed alpha
Helix 19
AC1
C
40 46Right-handed alpha
Helix 20
AC2
C
48 59Right-handed alpha
Helix 21
AC3
C
68 78Right-handed alpha
Helix 22
AC4
C
91 93Right-handed 310
Helix 23
AC5
C
94 101Right-handed alpha
Helix 24
AC6
C
109 121Right-handed alpha
Helix 25
AC7
C
144 157Right-handed alpha
Helix 26
AC8
C
179 198Right-handed alpha
Helix 27
AC9
C
209 216Right-handed alpha
Helix 28
AD1
C
217 220Right-handed 310
Helix 29
AD2
C
227 232Right-handed 310
Helix 30
AD3
C
268 272Right-handed 310
Helix 31
AD4
C
287 291Right-handed 310
Helix 32
AD5
C
293 297Right-handed 310
Helix 33
AD6
C
339 347Right-handed alpha
Helix 34
AD7
C
350 358Right-handed alpha
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There are 8 sheets in PDB entry 5YYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 338first strand
Strand 2
A
249 254anti-parallel
Strand 3
A
10 13anti-parallel
Strand 4
A
364 366parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
63 66parallel
Strand 3
A
84 86parallel
Strand 4
A
104 107parallel
Strand 5
A
127 132parallel
Strand 6
A
161 167parallel
Strand 7
A
204 208parallel
Strand 8
A
223 226parallel
Strand 9
A
35 39parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 261first strand
Strand 2
A
279 284anti-parallel
Strand 3
A
320 323anti-parallel
Strand 4
A
307 312anti-parallel
Strand 5
A
301 304anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
273 274anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
335 338first strand
Strand 2
C
249 254anti-parallel
Strand 3
C
10 13anti-parallel
Strand 4
C
364 366parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 39first strand
Strand 2
C
63 66parallel
Strand 3
C
84 86parallel
Strand 4
C
104 107parallel
Strand 5
C
127 132parallel
Strand 6
C
161 167parallel
Strand 7
C
204 208parallel
Strand 8
C
223 226parallel
Strand 9
C
35 39parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 261first strand
Strand 2
C
279 284anti-parallel
Strand 3
C
320 323anti-parallel
Strand 4
C
307 312anti-parallel
Strand 5
C
301 304anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
266 267first strand
Strand 2
C
273 274anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il