Analysis of interatomic Contacts of Structural Units in PDB entry:
5YYL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YYL entry

There are 4 chains in PDB entry 5YYL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 23	LEU 432
B	ASN 28	LEU 432
C	ASP 37	PHE 77
D	VAL 36	ALA 78

There are 22 helices in PDB entry 5YYL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	57	Right-handed alpha
Helix 2	AA2	A	60	64	Right-handed 310
Helix 3	AA3	A	109	114	Right-handed 310
Helix 4	AA4	A	171	176	Right-handed alpha
Helix 5	AA5	A	228	232	Right-handed 310
Helix 6	AA6	A	234	237	Right-handed 310
Helix 7	AA7	A	280	285	Right-handed alpha
Helix 8	AA8	A	337	341	Right-handed 310
Helix 9	AA9	A	366	371	Right-handed 310
Helix 10	AB1	A	384	390	Right-handed alpha
Helix 11	AB2	A	407	412	Right-handed alpha
Helix 12	AB3	B	46	57	Right-handed alpha
Helix 13	AB4	B	60	64	Right-handed 310
Helix 14	AB5	B	109	114	Right-handed 310
Helix 15	AB6	B	234	238	Right-handed 310
Helix 16	AB7	B	337	341	Right-handed 310
Helix 17	AB8	B	366	371	Right-handed 310
Helix 18	AB9	B	407	412	Right-handed alpha
Helix 19	AC1	C	38	52	Right-handed alpha
Helix 20	AC2	C	56	74	Right-handed alpha
Helix 21	AC3	D	37	52	Right-handed alpha
Helix 22	AC4	D	56	74	Right-handed alpha

There are 14 sheets in PDB entry 5YYL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	37	first strand
Strand 2	A	400	406	anti-parallel
Strand 3	A	376	383	anti-parallel
Strand 4	A	353	361	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	72	first strand
Strand 2	A	75	81	anti-parallel
Strand 3	A	90	97	anti-parallel
Strand 4	A	102	106	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	129	first strand
Strand 2	A	134	139	anti-parallel
Strand 3	A	153	158	anti-parallel
Strand 4	A	163	169	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	192	first strand
Strand 2	A	201	207	anti-parallel
Strand 3	A	212	217	anti-parallel
Strand 4	A	225	226	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	242	first strand
Strand 2	A	245	248	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	258	first strand
Strand 2	A	264	269	anti-parallel
Strand 3	A	275	279	anti-parallel
Strand 4	A	295	298	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	311	first strand
Strand 2	A	316	321	anti-parallel
Strand 3	A	326	331	anti-parallel
Strand 4	A	342	346	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	A	426	430	parallel
Strand 3	B	426	430	anti-parallel
Strand 4	B	373	374	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	37	first strand
Strand 2	B	400	406	anti-parallel
Strand 3	B	376	383	anti-parallel
Strand 4	B	353	361	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	72	first strand
Strand 2	B	75	81	anti-parallel
Strand 3	B	90	97	anti-parallel
Strand 4	B	102	106	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	129	first strand
Strand 2	B	134	139	anti-parallel
Strand 3	B	153	158	anti-parallel
Strand 4	B	163	169	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	191	first strand
Strand 2	B	202	207	anti-parallel
Strand 3	B	212	217	anti-parallel
Strand 4	B	225	226	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	258	first strand
Strand 2	B	264	267	anti-parallel
Strand 3	B	276	279	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	311	first strand
Strand 2	B	316	321	anti-parallel
Strand 3	B	326	331	anti-parallel
Strand 4	B	342	346	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YYL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YYL