Analysis of interatomic Contacts of Structural Units in PDB entry:
5YYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YYM entry

There are 2 chains in PDB entry 5YYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -7MET 577
B
 HIS -6MET 577
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5YYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 18Right-handed alpha
Helix 2
AA2
A
43 52Right-handed alpha
Helix 3
AA3
A
54 66Right-handed alpha
Helix 4
AA4
A
88 102Right-handed alpha
Helix 5
AA5
A
129 131Right-handed 310
Helix 6
AA6
A
132 149Right-handed alpha
Helix 7
AA7
A
164 178Right-handed alpha
Helix 8
AA8
A
188 201Right-handed alpha
Helix 9
AA9
A
203 220Right-handed alpha
Helix 10
AB1
A
221 246Right-handed alpha
Helix 11
AB2
A
251 255Right-handed 310
Helix 12
AB3
A
257 263Right-handed 310
Helix 13
AB4
A
264 275Right-handed alpha
Helix 14
AB5
A
312 327Right-handed alpha
Helix 15
AB6
A
338 340Right-handed 310
Helix 16
AB7
A
341 356Right-handed alpha
Helix 17
AB8
A
389 408Right-handed alpha
Helix 18
AB9
A
413 435Right-handed alpha
Helix 19
AC1
A
445 450Right-handed alpha
Helix 20
AC2
A
456 471Right-handed alpha
Helix 21
AC3
A
472 476Right-handed 310
Helix 22
AC4
A
477 484Right-handed alpha
Helix 23
AC5
A
490 501Right-handed alpha
Helix 24
AC6
A
502 514Right-handed alpha
Helix 25
AC7
A
516 537Right-handed alpha
Helix 26
AC8
A
544 569Right-handed alpha
Helix 27
AC9
B
2 19Right-handed alpha
Helix 28
AD1
B
33 37Right-handed 310
Helix 29
AD2
B
43 51Right-handed alpha
Helix 30
AD3
B
54 66Right-handed alpha
Helix 31
AD4
B
88 102Right-handed alpha
Helix 32
AD5
B
129 131Right-handed 310
Helix 33
AD6
B
132 149Right-handed alpha
Helix 34
AD7
B
165 177Right-handed alpha
Helix 35
AD8
B
191 202Right-handed alpha
Helix 36
AD9
B
206 219Right-handed alpha
Helix 37
AE1
B
221 246Right-handed alpha
Helix 38
AE2
B
251 255Right-handed 310
Helix 39
AE3
B
257 263Right-handed 310
Helix 40
AE4
B
264 275Right-handed alpha
Helix 41
AE5
B
312 327Right-handed alpha
Helix 42
AE6
B
338 340Right-handed 310
Helix 43
AE7
B
341 355Right-handed alpha
Helix 44
AE8
B
389 407Right-handed alpha
Helix 45
AE9
B
413 435Right-handed alpha
Helix 46
AF1
B
445 450Right-handed alpha
Helix 47
AF2
B
456 471Right-handed alpha
Helix 48
AF3
B
472 476Right-handed 310
Helix 49
AF4
B
477 484Right-handed alpha
Helix 50
AF5
B
490 501Right-handed alpha
Helix 51
AF6
B
502 514Right-handed alpha
Helix 52
AF7
B
516 537Right-handed alpha
Helix 53
AF8
B
544 568Right-handed alpha
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There are 8 sheets in PDB entry 5YYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
39 41anti-parallel
Strand 3
A
82 87anti-parallel
Strand 4
A
72 78anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
114 118parallel
Strand 3
A
332 335parallel
Strand 4
A
364 366parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 281first strand
Strand 2
A
284 293anti-parallel
Strand 3
A
299 305anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
442 443parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
39 41anti-parallel
Strand 3
B
82 87anti-parallel
Strand 4
B
72 78anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
114 118parallel
Strand 3
B
332 335parallel
Strand 4
B
364 366parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 281first strand
Strand 2
B
284 293anti-parallel
Strand 3
B
299 305anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
372 373first strand
Strand 2
B
442 443parallel
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