Analysis of interatomic Contacts of Structural Units in PDB entry:
5YYS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YYS entry

There are 4 chains in PDB entry 5YYS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 71	SER 949
B	LEU 71	SER 949
C	LEU 71	SER 949
D	LEU 71	SER 949

There are 96 helices in PDB entry 5YYS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	107	119	Right-handed alpha
Helix 2	AA2	A	162	168	Right-handed alpha
Helix 3	AA3	A	189	195	Right-handed alpha
Helix 4	AA4	A	214	218	Right-handed 310
Helix 5	AA5	A	236	245	Right-handed alpha
Helix 6	AA6	A	247	253	Right-handed alpha
Helix 7	AA7	A	275	284	Right-handed alpha
Helix 8	AA8	A	381	389	Right-handed 310
Helix 9	AA9	A	468	479	Right-handed alpha
Helix 10	AB1	A	479	491	Right-handed alpha
Helix 11	AB2	A	502	509	Right-handed alpha
Helix 12	AB3	A	516	522	Right-handed alpha
Helix 13	AB4	A	527	545	Right-handed alpha
Helix 14	AB5	A	548	566	Right-handed alpha
Helix 15	AB6	A	667	675	Right-handed alpha
Helix 16	AB7	A	687	696	Right-handed alpha
Helix 17	AB8	A	717	734	Right-handed alpha
Helix 18	AB9	A	739	755	Right-handed alpha
Helix 19	AC1	A	760	766	Right-handed alpha
Helix 20	AC2	A	817	824	Right-handed alpha
Helix 21	AC3	A	830	852	Right-handed alpha
Helix 22	AC4	A	854	871	Right-handed alpha
Helix 23	AC5	A	878	887	Right-handed alpha
Helix 24	AC6	A	913	925	Right-handed alpha
Helix 25	AC7	B	107	119	Right-handed alpha
Helix 26	AC8	B	162	168	Right-handed alpha
Helix 27	AC9	B	189	195	Right-handed alpha
Helix 28	AD1	B	214	218	Right-handed 310
Helix 29	AD2	B	236	245	Right-handed alpha
Helix 30	AD3	B	247	253	Right-handed alpha
Helix 31	AD4	B	275	284	Right-handed alpha
Helix 32	AD5	B	381	389	Right-handed 310
Helix 33	AD6	B	468	479	Right-handed alpha
Helix 34	AD7	B	479	491	Right-handed alpha
Helix 35	AD8	B	502	509	Right-handed alpha
Helix 36	AD9	B	516	522	Right-handed alpha
Helix 37	AE1	B	527	545	Right-handed alpha
Helix 38	AE2	B	548	566	Right-handed alpha
Helix 39	AE3	B	667	675	Right-handed alpha
Helix 40	AE4	B	687	696	Right-handed alpha
Helix 41	AE5	B	717	734	Right-handed alpha
Helix 42	AE6	B	739	755	Right-handed alpha
Helix 43	AE7	B	760	766	Right-handed alpha
Helix 44	AE8	B	817	824	Right-handed alpha
Helix 45	AE9	B	830	852	Right-handed alpha
Helix 46	AF1	B	854	871	Right-handed alpha
Helix 47	AF2	B	878	887	Right-handed alpha
Helix 48	AF3	B	913	925	Right-handed alpha
Helix 49	AF4	C	107	119	Right-handed alpha
Helix 50	AF5	C	162	168	Right-handed alpha
Helix 51	AF6	C	189	195	Right-handed alpha
Helix 52	AF7	C	214	218	Right-handed 310
Helix 53	AF8	C	236	245	Right-handed alpha
Helix 54	AF9	C	247	253	Right-handed alpha
Helix 55	AG1	C	275	284	Right-handed alpha
Helix 56	AG2	C	381	389	Right-handed 310
Helix 57	AG3	C	468	479	Right-handed alpha
Helix 58	AG4	C	479	491	Right-handed alpha
Helix 59	AG5	C	502	509	Right-handed alpha
Helix 60	AG6	C	516	522	Right-handed alpha
Helix 61	AG7	C	527	545	Right-handed alpha
Helix 62	AG8	C	548	566	Right-handed alpha
Helix 63	AG9	C	667	675	Right-handed alpha
Helix 64	AH1	C	687	696	Right-handed alpha
Helix 65	AH2	C	717	734	Right-handed alpha
Helix 66	AH3	C	739	755	Right-handed alpha
Helix 67	AH4	C	760	766	Right-handed alpha
Helix 68	AH5	C	817	824	Right-handed alpha
Helix 69	AH6	C	830	852	Right-handed alpha
Helix 70	AH7	C	854	871	Right-handed alpha
Helix 71	AH8	C	878	887	Right-handed alpha
Helix 72	AH9	C	913	925	Right-handed alpha
Helix 73	AI1	D	107	119	Right-handed alpha
Helix 74	AI2	D	162	168	Right-handed alpha
Helix 75	AI3	D	189	195	Right-handed alpha
Helix 76	AI4	D	214	218	Right-handed 310
Helix 77	AI5	D	236	245	Right-handed alpha
Helix 78	AI6	D	247	253	Right-handed alpha
Helix 79	AI7	D	275	284	Right-handed alpha
Helix 80	AI8	D	381	389	Right-handed 310
Helix 81	AI9	D	468	479	Right-handed alpha
Helix 82	AJ1	D	479	491	Right-handed alpha
Helix 83	AJ2	D	502	509	Right-handed alpha
Helix 84	AJ3	D	516	522	Right-handed alpha
Helix 85	AJ4	D	527	545	Right-handed alpha
Helix 86	AJ5	D	548	566	Right-handed alpha
Helix 87	AJ6	D	667	675	Right-handed alpha
Helix 88	AJ7	D	687	696	Right-handed alpha
Helix 89	AJ8	D	717	734	Right-handed alpha
Helix 90	AJ9	D	739	755	Right-handed alpha
Helix 91	AK1	D	760	766	Right-handed alpha
Helix 92	AK2	D	817	824	Right-handed alpha
Helix 93	AK3	D	830	852	Right-handed alpha
Helix 94	AK4	D	854	871	Right-handed alpha
Helix 95	AK5	D	878	887	Right-handed alpha
Helix 96	AK6	D	913	925	Right-handed alpha

There are 20 sheets in PDB entry 5YYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	263	264	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	A	170	172	anti-parallel
Strand 3	A	202	203	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	228	230	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	587	first strand
Strand 2	A	628	631	anti-parallel
Strand 3	A	703	705	anti-parallel
Strand 4	A	638	641	parallel
Strand 5	A	649	651	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	895	896	first strand
Strand 2	A	907	908	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	263	264	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	170	172	anti-parallel
Strand 3	B	202	203	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	228	230	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	587	first strand
Strand 2	B	628	631	anti-parallel
Strand 3	B	703	705	anti-parallel
Strand 4	B	638	641	parallel
Strand 5	B	649	651	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	895	896	first strand
Strand 2	B	907	908	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	157	first strand
Strand 2	C	263	264	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	185	first strand
Strand 2	C	170	172	anti-parallel
Strand 3	C	202	203	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	228	230	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	585	587	first strand
Strand 2	C	628	631	anti-parallel
Strand 3	C	703	705	anti-parallel
Strand 4	C	638	641	parallel
Strand 5	C	649	651	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	895	896	first strand
Strand 2	C	907	908	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	157	first strand
Strand 2	D	263	264	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	185	first strand
Strand 2	D	170	172	anti-parallel
Strand 3	D	202	203	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	223	first strand
Strand 2	D	228	230	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	585	587	first strand
Strand 2	D	628	631	anti-parallel
Strand 3	D	703	705	anti-parallel
Strand 4	D	638	641	parallel
Strand 5	D	649	651	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	895	896	first strand
Strand 2	D	907	908	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YYS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YYS