Analysis of interatomic Contacts of Structural Units in PDB entry:
5YZ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YZ0 entry

There are 4 chains in PDB entry 5YZ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 2MET 2644
B
GLY 2MET 2644
C
MET 1THR 362
D
SER 5ILE 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are297 helices in PDB entry 5YZ0. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
2 8Right-handed alpha
Helix 2
AA2
A
10 18Right-handed alpha
Helix 3
AA3
A
26 44Right-handed alpha
Helix 4
AA4
A
50 71Right-handed alpha
Helix 5
AA5
A
77 91Right-handed alpha
Helix 6
AA6
A
92 94Right-handed 310
Helix 7
AA7
A
96 120Right-handed alpha
Helix 8
AA8
A
123 142Right-handed alpha
Helix 9
AA9
A
145 150Right-handed alpha
Helix 10
AB1
A
151 153Right-handed 310
Helix 11
AB2
A
155 166Right-handed alpha
Helix 12
AB3
A
170 188Right-handed alpha
Helix 13
AB4
A
193 209Right-handed alpha
Helix 14
AB5
A
212 230Right-handed alpha
Helix 15
AB6
A
239 250Right-handed alpha
Helix 16
AB7
A
253 259Right-handed alpha
Helix 17
AB8
A
262 280Right-handed alpha
Helix 18
AB9
A
284 303Right-handed alpha
Helix 19
AC1
A
312 326Right-handed alpha
Helix 20
AC2
A
337 356Right-handed alpha
Helix 21
AC3
A
361 382Right-handed alpha
Helix 22
AC4
A
387 396Right-handed 310
Helix 23
AC5
A
397 414Right-handed alpha
Helix 24
AC6
A
421 442Right-handed alpha
Helix 25
AC7
A
447 459Right-handed alpha
Helix 26
AC8
A
469 475Right-handed alpha
Helix 27
AC9
A
483 500Right-handed alpha
Helix 28
AD1
A
501 516Right-handed alpha
Helix 29
AD2
A
520 537Right-handed alpha
Helix 30
AD3
A
540 559Right-handed alpha
Helix 31
AD4
A
562 576Right-handed alpha
Helix 32
AD5
A
581 596Right-handed alpha
Helix 33
AD6
A
598 613Right-handed alpha
Helix 34
AD7
A
621 635Right-handed alpha
Helix 35
AD8
A
636 638Right-handed 310
Helix 36
AD9
A
641 653Right-handed alpha
Helix 37
AE1
A
658 663Right-handed alpha
Helix 38
AE2
A
664 678Right-handed alpha
Helix 39
AE3
A
681 695Right-handed alpha
Helix 40
AE4
A
696 698Right-handed 310
Helix 41
AE5
A
702 716Right-handed alpha
Helix 42
AE6
A
716 721Right-handed alpha
Helix 43
AE7
A
723 739Right-handed alpha
Helix 44
AE8
A
748 762Right-handed alpha
Helix 45
AE9
A
776 789Right-handed alpha
Helix 46
AF1
A
797 808Right-handed alpha
Helix 47
AF2
A
813 826Right-handed alpha
Helix 48
AF3
A
831 839Right-handed alpha
Helix 49
AF4
A
841 848Right-handed alpha
Helix 50
AF5
A
852 866Right-handed alpha
Helix 51
AF6
A
873 885Right-handed alpha
Helix 52
AF7
A
889 904Right-handed alpha
Helix 53
AF8
A
910 929Right-handed alpha
Helix 54
AF9
A
934 946Right-handed alpha
Helix 55
AG1
A
954 969Right-handed alpha
Helix 56
AG2
A
973 991Right-handed alpha
Helix 57
AG3
A
997 1012Right-handed alpha
Helix 58
AG4
A
1014 1030Right-handed alpha
Helix 59
AG5
A
1036 1049Right-handed alpha
Helix 60
AG6
A
1052 1068Right-handed alpha
Helix 61
AG7
A
1103 1118Right-handed alpha
Helix 62
AG8
A
1122 1137Right-handed alpha
Helix 63
AG9
A
1140 1145Right-handed alpha
Helix 64
AH1
A
1152 1163Right-handed alpha
Helix 65
AH2
A
1170 1182Right-handed alpha
Helix 66
AH3
A
1384 1398Right-handed alpha
Helix 67
AH4
A
1400 1414Right-handed alpha
Helix 68
AH5
A
1420 1434Right-handed alpha
Helix 69
AH6
A
1438 1444Right-handed alpha
Helix 70
AH7
A
1446 1455Right-handed alpha
Helix 71
AH8
A
1474 1482Right-handed alpha
Helix 72
AH9
A
1486 1499Right-handed alpha
Helix 73
AI1
A
1503 1520Right-handed alpha
Helix 74
AI2
A
1521 1539Right-handed alpha
Helix 75
AI3
A
1542 1559Right-handed alpha
Helix 76
AI4
A
1573 1603Right-handed alpha
Helix 77
AI5
A
1616 1636Right-handed alpha
Helix 78
AI6
A
1638 1648Right-handed alpha
Helix 79
AI7
A
1651 1664Right-handed alpha
Helix 80
AI8
A
1668 1682Right-handed alpha
Helix 81
AI9
A
1685 1694Right-handed alpha
Helix 82
AJ1
A
1701 1713Right-handed alpha
Helix 83
AJ2
A
1717 1727Right-handed alpha
Helix 84
AJ3
A
1733 1746Right-handed alpha
Helix 85
AJ4
A
1748 1763Right-handed alpha
Helix 86
AJ5
A
1767 1771Right-handed 310
Helix 87
AJ6
A
1784 1791Right-handed alpha
Helix 88
AJ7
A
1799 1813Right-handed alpha
Helix 89
AJ8
A
1815 1835Right-handed alpha
Helix 90
AJ9
A
1842 1846Right-handed 310
Helix 91
AK1
A
1847 1869Right-handed alpha
Helix 92
AK2
A
1892 1897Right-handed 310
Helix 93
AK3
A
1904 1913Right-handed alpha
Helix 94
AK4
A
1914 1916Right-handed 310
Helix 95
AK5
A
1922 1937Right-handed alpha
Helix 96
AK6
A
1945 1951Right-handed alpha
Helix 97
AK7
A
1958 1973Right-handed alpha
Helix 98
AK8
A
1975 1983Right-handed alpha
Helix 99
AK9
A
1985 1989Right-handed 310
Helix 100
AL1
A
1997 2002Right-handed alpha
Helix 101
AL2
A
2005 2010Right-handed alpha
Helix 102
AL3
A
2012 2017Right-handed alpha
Helix 103
AL4
A
2021 2032Right-handed alpha
Helix 104
AL5
A
2032 2037Right-handed alpha
Helix 105
AL6
A
2043 2057Right-handed alpha
Helix 106
AL7
A
2063 2078Right-handed alpha
Helix 107
AL8
A
2086 2109Right-handed alpha
Helix 108
AL9
A
2111 2133Right-handed alpha
Helix 109
AM1
A
2134 2139Right-handed alpha
Helix 110
AM2
A
2141 2148Right-handed alpha
Helix 111
AM3
A
2155 2170Right-handed alpha
Helix 112
AM4
A
2173 2184Right-handed alpha
Helix 113
AM5
A
2187 2203Right-handed alpha
Helix 114
AM6
A
2204 2207Right-handed 310
Helix 115
AM7
A
2208 2228Right-handed alpha
Helix 116
AM8
A
2245 2249Right-handed alpha
Helix 117
AM9
A
2249 2254Right-handed alpha
Helix 118
AN1
A
2332 2352Right-handed alpha
Helix 119
AN2
A
2353 2359Right-handed alpha
Helix 120
AN3
A
2385 2397Right-handed alpha
Helix 121
AN4
A
2416 2429Right-handed alpha
Helix 122
AN5
A
2434 2443Right-handed alpha
Helix 123
AN6
A
2448 2471Right-handed alpha
Helix 124
AN7
A
2500 2505Right-handed alpha
Helix 125
AN8
A
2516 2523Right-handed alpha
Helix 126
AN9
A
2530 2546Right-handed alpha
Helix 127
AO1
A
2547 2552Right-handed alpha
Helix 128
AO2
A
2552 2559Right-handed alpha
Helix 129
AO3
A
2587 2597Right-handed alpha
Helix 130
AO4
A
2615 2626Right-handed alpha
Helix 131
AO5
A
2629 2634Right-handed alpha
Helix 132
AO6
A
2635 2636Right-handed 310
Helix 133
AO7
A
2637 2641Right-handed 310
Helix 134
AO8
B
3 17Right-handed alpha
Helix 135
AO9
B
26 44Right-handed alpha
Helix 136
AP1
B
50 71Right-handed alpha
Helix 137
AP2
B
77 92Right-handed alpha
Helix 138
AP3
B
96 120Right-handed alpha
Helix 139
AP4
B
123 144Right-handed alpha
Helix 140
AP5
B
146 153Right-handed 310
Helix 141
AP6
B
155 165Right-handed alpha
Helix 142
AP7
B
170 188Right-handed alpha
Helix 143
AP8
B
193 209Right-handed alpha
Helix 144
AP9
B
212 219Right-handed alpha
Helix 145
AQ1
B
219 229Right-handed alpha
Helix 146
AQ2
B
235 250Right-handed alpha
Helix 147
AQ3
B
253 258Right-handed alpha
Helix 148
AQ4
B
262 279Right-handed alpha
Helix 149
AQ5
B
284 303Right-handed alpha
Helix 150
AQ6
B
312 328Right-handed alpha
Helix 151
AQ7
B
337 355Right-handed alpha
Helix 152
AQ8
B
362 383Right-handed alpha
Helix 153
AQ9
B
393 396Right-handed 310
Helix 154
AR1
B
397 416Right-handed alpha
Helix 155
AR2
B
422 442Right-handed alpha
Helix 156
AR3
B
446 459Right-handed alpha
Helix 157
AR4
B
470 478Right-handed alpha
Helix 158
AR5
B
479 481Right-handed 310
Helix 159
AR6
B
483 500Right-handed alpha
Helix 160
AR7
B
501 516Right-handed alpha
Helix 161
AR8
B
521 536Right-handed alpha
Helix 162
AR9
B
542 558Right-handed alpha
Helix 163
AS1
B
562 572Right-handed alpha
Helix 164
AS2
B
580 596Right-handed alpha
Helix 165
AS3
B
598 613Right-handed alpha
Helix 166
AS4
B
623 635Right-handed alpha
Helix 167
AS5
B
641 653Right-handed alpha
Helix 168
AS6
B
658 678Right-handed alpha
Helix 169
AS7
B
681 696Right-handed alpha
Helix 170
AS8
B
700 720Right-handed alpha
Helix 171
AS9
B
723 739Right-handed alpha
Helix 172
AT1
B
749 764Right-handed alpha
Helix 173
AT2
B
775 788Right-handed alpha
Helix 174
AT3
B
792 797Right-handed alpha
Helix 175
AT4
B
797 808Right-handed alpha
Helix 176
AT5
B
814 826Right-handed alpha
Helix 177
AT6
B
831 839Right-handed alpha
Helix 178
AT7
B
841 846Right-handed alpha
Helix 179
AT8
B
849 866Right-handed alpha
Helix 180
AT9
B
873 885Right-handed alpha
Helix 181
AU1
B
889 901Right-handed alpha
Helix 182
AU2
B
910 931Right-handed alpha
Helix 183
AU3
B
934 949Right-handed alpha
Helix 184
AU4
B
956 968Right-handed alpha
Helix 185
AU5
B
973 991Right-handed alpha
Helix 186
AU6
B
999 1011Right-handed alpha
Helix 187
AU7
B
1014 1031Right-handed alpha
Helix 188
AU8
B
1039 1043Right-handed 310
Helix 189
AU9
B
1052 1066Right-handed alpha
Helix 190
AV1
B
1103 1115Right-handed alpha
Helix 191
AV2
B
1122 1136Right-handed alpha
Helix 192
AV3
B
1152 1163Right-handed alpha
Helix 193
AV4
B
1168 1175Right-handed alpha
Helix 194
AV5
B
1175 1180Right-handed alpha
Helix 195
AV6
B
1384 1398Right-handed alpha
Helix 196
AV7
B
1401 1414Right-handed alpha
Helix 197
AV8
B
1415 1417Right-handed 310
Helix 198
AV9
B
1420 1433Right-handed alpha
Helix 199
AW1
B
1438 1443Right-handed alpha
Helix 200
AW2
B
1446 1455Right-handed alpha
Helix 201
AW3
B
1471 1479Right-handed alpha
Helix 202
AW4
B
1486 1499Right-handed alpha
Helix 203
AW5
B
1503 1520Right-handed alpha
Helix 204
AW6
B
1521 1527Right-handed alpha
Helix 205
AW7
B
1528 1537Right-handed alpha
Helix 206
AW8
B
1541 1543Right-handed 310
Helix 207
AW9
B
1544 1558Right-handed alpha
Helix 208
AX1
B
1573 1601Right-handed alpha
Helix 209
AX2
B
1616 1634Right-handed alpha
Helix 210
AX3
B
1638 1648Right-handed alpha
Helix 211
AX4
B
1652 1664Right-handed alpha
Helix 212
AX5
B
1674 1683Right-handed alpha
Helix 213
AX6
B
1685 1694Right-handed alpha
Helix 214
AX7
B
1701 1708Right-handed alpha
Helix 215
AX8
B
1708 1713Right-handed alpha
Helix 216
AX9
B
1717 1729Right-handed alpha
Helix 217
AY1
B
1733 1746Right-handed alpha
Helix 218
AY2
B
1748 1761Right-handed alpha
Helix 219
AY3
B
1769 1774Right-handed alpha
Helix 220
AY4
B
1776 1780Right-handed 310
Helix 221
AY5
B
1784 1791Right-handed alpha
Helix 222
AY6
B
1801 1813Right-handed alpha
Helix 223
AY7
B
1815 1827Right-handed alpha
Helix 224
AY8
B
1842 1847Right-handed alpha
Helix 225
AY9
B
1847 1865Right-handed alpha
Helix 226
AZ1
B
1866 1868Right-handed 310
Helix 227
AZ2
B
1892 1897Right-handed 310
Helix 228
AZ3
B
1904 1913Right-handed alpha
Helix 229
AZ4
B
1913 1918Right-handed alpha
Helix 230
AZ5
B
1922 1939Right-handed alpha
Helix 231
AZ6
B
1943 1945Right-handed 310
Helix 232
AZ7
B
1946 1951Right-handed alpha
Helix 233
AZ8
B
1958 1973Right-handed alpha
Helix 234
AZ9
B
1975 1983Right-handed alpha
Helix 235
BA1
B
1997 2005Right-handed alpha
Helix 236
BA2
B
2011 2016Right-handed 310
Helix 237
BA3
B
2021 2032Right-handed alpha
Helix 238
BA4
B
2042 2057Right-handed alpha
Helix 239
BA5
B
2064 2078Right-handed alpha
Helix 240
BA6
B
2086 2100Right-handed alpha
Helix 241
BA7
B
2101 2109Right-handed alpha
Helix 242
BA8
B
2111 2133Right-handed alpha
Helix 243
BA9
B
2134 2139Right-handed 310
Helix 244
BB1
B
2141 2148Right-handed alpha
Helix 245
BB2
B
2153 2169Right-handed alpha
Helix 246
BB3
B
2171 2184Right-handed alpha
Helix 247
BB4
B
2187 2203Right-handed alpha
Helix 248
BB5
B
2208 2228Right-handed alpha
Helix 249
BB6
B
2245 2249Right-handed alpha
Helix 250
BB7
B
2249 2254Right-handed alpha
Helix 251
BB8
B
2332 2352Right-handed alpha
Helix 252
BB9
B
2352 2358Right-handed alpha
Helix 253
BC1
B
2385 2395Right-handed alpha
Helix 254
BC2
B
2416 2426Right-handed alpha
Helix 255
BC3
B
2434 2443Right-handed alpha
Helix 256
BC4
B
2450 2472Right-handed alpha
Helix 257
BC5
B
2516 2522Right-handed alpha
Helix 258
BC6
B
2530 2546Right-handed alpha
Helix 259
BC7
B
2546 2559Right-handed alpha
Helix 260
BC8
B
2587 2599Right-handed alpha
Helix 261
BC9
B
2615 2629Right-handed alpha
Helix 262
BD1
B
2629 2635Right-handed alpha
Helix 263
BD2
C
5 13Right-handed alpha
Helix 264
BD3
C
29 42Right-handed alpha
Helix 265
BD4
C
42 50Right-handed alpha
Helix 266
BD5
C
65 74Right-handed alpha
Helix 267
BD6
C
82 100Right-handed alpha
Helix 268
BD7
C
110 122Right-handed alpha
Helix 269
BD8
C
127 137Right-handed alpha
Helix 270
BD9
C
145 160Right-handed alpha
Helix 271
BE1
C
168 173Right-handed alpha
Helix 272
BE2
C
176 180Right-handed 310
Helix 273
BE3
C
187 202Right-handed alpha
Helix 274
BE4
C
208 213Right-handed alpha
Helix 275
BE5
C
216 231Right-handed alpha
Helix 276
BE6
C
237 251Right-handed alpha
Helix 277
BE7
C
253 258Right-handed alpha
Helix 278
BE8
C
269 279Right-handed alpha
Helix 279
BE9
C
282 290Right-handed alpha
Helix 280
BF1
C
297 319Right-handed alpha
Helix 281
BF2
C
328 346Right-handed alpha
Helix 282
BF3
C
350 361Right-handed alpha
Helix 283
BF4
D
30 40Right-handed alpha
Helix 284
BF5
D
65 74Right-handed alpha
Helix 285
BF6
D
81 87Right-handed alpha
Helix 286
BF7
D
87 92Right-handed alpha
Helix 287
BF8
D
107 122Right-handed alpha
Helix 288
BF9
D
125 137Right-handed alpha
Helix 289
BG1
D
143 158Right-handed alpha
Helix 290
BG2
D
168 173Right-handed 310
Helix 291
BG3
D
187 201Right-handed alpha
Helix 292
BG4
D
208 213Right-handed alpha
Helix 293
BG5
D
216 228Right-handed alpha
Helix 294
BG6
D
238 255Right-handed alpha
Helix 295
BG7
D
268 279Right-handed alpha
Helix 296
BG8
D
279 284Right-handed alpha
Helix 297
BG9
D
306 315Right-handed alpha
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There are 4 sheets in PDB entry 5YZ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2243 2244first strand
Strand 2
A
2299 2302anti-parallel
Strand 3
A
2310 2313anti-parallel
Strand 4
A
2323 2326anti-parallel
Strand 5
A
2375 2378anti-parallel
Strand 6
A
2367 2369anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2481 2483first strand
Strand 2
A
2490 2492anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2243 2244first strand
Strand 2
B
2299 2302anti-parallel
Strand 3
B
2310 2313anti-parallel
Strand 4
B
2323 2326anti-parallel
Strand 5
B
2375 2379anti-parallel
Strand 6
B
2367 2369anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2481 2483first strand
Strand 2
B
2490 2492anti-parallel
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