Analysis of interatomic Contacts of Structural Units in PDB entry:
5YZ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YZ2 entry

There are 2 chains in PDB entry 5YZ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 63GLU 193
B
 GLU 63LEU 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5YZ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 67Right-handed 310
Helix 2
AA2
A
68 73Right-handed alpha
Helix 3
AA3
A
77 79Right-handed 310
Helix 4
AA4
A
87 99Right-handed alpha
Helix 5
AA5
A
120 127Right-handed 310
Helix 6
AA6
A
134 139Right-handed alpha
Helix 7
AA7
A
150 162Right-handed alpha
Helix 8
AA8
A
181 193Right-handed alpha
Helix 9
AA9
B
63 67Right-handed 310
Helix 10
AB1
B
68 73Right-handed alpha
Helix 11
AB2
B
77 79Right-handed 310
Helix 12
AB3
B
87 99Right-handed alpha
Helix 13
AB4
B
120 127Right-handed 310
Helix 14
AB5
B
134 139Right-handed alpha
Helix 15
AB6
B
150 162Right-handed alpha
Helix 16
AB7
B
181 198Right-handed alpha
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There are 4 sheets in PDB entry 5YZ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
175 180anti-parallel
Strand 3
A
165 169anti-parallel
Strand 4
A
144 146parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
102 106parallel
Strand 3
A
113 118anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 75first strand
Strand 2
B
175 180anti-parallel
Strand 3
B
165 169anti-parallel
Strand 4
B
144 146parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
102 106parallel
Strand 3
B
113 118anti-parallel
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