Analysis of interatomic Contacts of Structural Units in PDB entry:
5YZ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YZ4 entry

There is 1 chain in PDB entry 5YZ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 60ASP 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5YZ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 80Right-handed alpha
Helix 2
AA2
A
83 93Right-handed alpha
Helix 3
AA3
A
102 111Right-handed alpha
Helix 4
AA4
A
112 114Right-handed 310
Helix 5
AA5
A
115 123Right-handed alpha
Helix 6
AA6
A
138 150Right-handed alpha
Helix 7
AA7
A
159 167Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5YZ4.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
96 101parallel
Strand 3
A
65 69parallel
Strand 4
A
154 156parallel
Strand 5
A
174 178parallel
Strand 6
A
181 186anti-parallel
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