Analysis of interatomic Contacts of Structural Units in PDB entry:
5YZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YZD entry

There are 3 chains in PDB entry 5YZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 24VAL 104
C
 GLY 115ASP 481
B
 PHE 3GLY 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5YZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 32Right-handed alpha
Helix 2
AA2
A
62 66Right-handed 310
Helix 3
AA3
A
69 96Right-handed alpha
Helix 4
AA4
A
102 104Right-handed 310
Helix 5
AA5
C
119 124Right-handed alpha
Helix 6
AA6
C
127 141Right-handed alpha
Helix 7
AA7
C
143 156Right-handed alpha
Helix 8
AA8
C
178 185Right-handed alpha
Helix 9
AA9
C
186 190Right-handed 310
Helix 10
AB1
C
194 218Right-handed alpha
Helix 11
AB2
C
242 250Right-handed alpha
Helix 12
AB3
C
255 263Right-handed alpha
Helix 13
AB4
C
352 360Right-handed alpha
Helix 14
AB5
C
362 366Right-handed 310
Helix 15
AB6
C
442 446Right-handed 310
Helix 16
AB7
C
455 481Right-handed alpha
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There are 6 sheets in PDB entry 5YZD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 164first strand
Strand 2
C
172 175anti-parallel
Strand 3
A
35 57parallel
Strand 4
C
278 301anti-parallel
Strand 5
C
340 343first strand
Strand 6
C
334 337anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 230first strand
Strand 2
C
266 273anti-parallel
Strand 3
C
278 301anti-parallel
Strand 4
A
35 57anti-parallel
Strand 5
C
318 322first strand
Strand 6
C
325 329anti-parallel
Strand 7
C
348 349anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
C
116 118anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
304 306first strand
Strand 2
C
309 314anti-parallel
Strand 3
C
367 370anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
379 382first strand
Strand 2
C
385 388anti-parallel
Strand 3
C
413 415anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
395 397first strand
Strand 2
C
422 425anti-parallel
Strand 3
C
428 431anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il