Analysis of interatomic Contacts of Structural Units in PDB entry:
5YZW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YZW entry

There are 2 chains in PDB entry 5YZW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 425ILE 615
B
 GLY 423ILE 615
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 5YZW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
472 478Right-handed 310
Helix 2
AA2
A
501 503Right-handed 310
Helix 3
AA3
A
517 526Right-handed alpha
Helix 4
AA4
A
529 535Right-handed alpha
Helix 5
AA5
A
574 580Right-handed 310
Helix 6
AA6
B
424 426Right-handed 310
Helix 7
AA7
B
472 479Right-handed 310
Helix 8
AA8
B
501 503Right-handed 310
Helix 9
AA9
B
517 526Right-handed alpha
Helix 10
AB1
B
529 534Right-handed alpha
Helix 11
AB2
B
574 580Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 5YZW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
A
490 493anti-parallel
Strand 3
A
496 499anti-parallel
Strand 4
A
465 470parallel
Strand 5
A
452 460anti-parallel
Strand 6
A
444 447anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
A
490 493anti-parallel
Strand 3
A
496 499anti-parallel
Strand 4
A
465 470parallel
Strand 5
A
452 460anti-parallel
Strand 6
A
433 440anti-parallel
Strand 7
A
484 487anti-parallel
Strand 8
A
505 506anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 614first strand
Strand 2
A
587 597anti-parallel
Strand 3
A
602 605anti-parallel
Strand 4
A
567 573parallel
Strand 5
A
557 564anti-parallel
Strand 6
A
541 554anti-parallel
Strand 7
A
587 597anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 429first strand
Strand 2
B
490 493anti-parallel
Strand 3
B
496 499anti-parallel
Strand 4
B
465 470parallel
Strand 5
B
452 460anti-parallel
Strand 6
B
444 447anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 429first strand
Strand 2
B
490 493anti-parallel
Strand 3
B
496 499anti-parallel
Strand 4
B
465 470parallel
Strand 5
B
452 460anti-parallel
Strand 6
B
433 440anti-parallel
Strand 7
B
484 487anti-parallel
Strand 8
B
505 506anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
611 614first strand
Strand 2
B
587 598anti-parallel
Strand 3
B
601 605anti-parallel
Strand 4
B
568 573parallel
Strand 5
B
558 563anti-parallel
Strand 6
B
541 553anti-parallel
Strand 7
B
587 598anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il