Analysis of interatomic Contacts of Structural Units in PDB entry:
5YZX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YZX entry

There are 3 chains in PDB entry 5YZX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 12	PRO 502
B	ILE 12	PRO 502
C	ILE 12	PHE 323

There are 58 helices in PDB entry 5YZX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	31	Right-handed alpha
Helix 2	AA2	A	44	53	Right-handed alpha
Helix 3	AA3	A	56	63	Right-handed alpha
Helix 4	AA4	A	106	111	Right-handed alpha
Helix 5	AA5	A	112	115	Right-handed 310
Helix 6	AA6	A	163	168	Right-handed alpha
Helix 7	AA7	A	168	176	Right-handed alpha
Helix 8	AA8	A	176	199	Right-handed alpha
Helix 9	AA9	A	239	249	Right-handed alpha
Helix 10	AB1	A	285	305	Right-handed alpha
Helix 11	AB2	A	328	336	Right-handed alpha
Helix 12	AB3	A	340	345	Right-handed 310
Helix 13	AB4	A	346	358	Right-handed alpha
Helix 14	AB5	A	366	379	Right-handed alpha
Helix 15	AB6	A	380	383	Right-handed 310
Helix 16	AB7	A	431	448	Right-handed alpha
Helix 17	AB8	A	457	467	Right-handed alpha
Helix 18	AB9	A	478	487	Right-handed alpha
Helix 19	AC1	A	490	495	Right-handed alpha
Helix 20	AC2	B	13	31	Right-handed alpha
Helix 21	AC3	B	44	53	Right-handed alpha
Helix 22	AC4	B	56	63	Right-handed alpha
Helix 23	AC5	B	106	111	Right-handed alpha
Helix 24	AC6	B	112	115	Right-handed 310
Helix 25	AC7	B	163	168	Right-handed alpha
Helix 26	AC8	B	168	176	Right-handed alpha
Helix 27	AC9	B	176	200	Right-handed alpha
Helix 28	AD1	B	239	249	Right-handed alpha
Helix 29	AD2	B	285	304	Right-handed alpha
Helix 30	AD3	B	328	336	Right-handed alpha
Helix 31	AD4	B	340	345	Right-handed 310
Helix 32	AD5	B	346	358	Right-handed alpha
Helix 33	AD6	B	366	379	Right-handed alpha
Helix 34	AD7	B	380	383	Right-handed 310
Helix 35	AD8	B	395	397	Right-handed 310
Helix 36	AD9	B	431	448	Right-handed alpha
Helix 37	AE1	B	457	467	Right-handed alpha
Helix 38	AE2	B	478	487	Right-handed alpha
Helix 39	AE3	B	490	495	Right-handed alpha
Helix 40	AE4	C	13	31	Right-handed alpha
Helix 41	AE5	C	44	53	Right-handed alpha
Helix 42	AE6	C	56	63	Right-handed alpha
Helix 43	AE7	C	106	111	Right-handed alpha
Helix 44	AE8	C	112	115	Right-handed 310
Helix 45	AE9	C	163	168	Right-handed alpha
Helix 46	AF1	C	168	176	Right-handed alpha
Helix 47	AF2	C	176	200	Right-handed alpha
Helix 48	AF3	C	239	249	Right-handed alpha
Helix 49	AF4	C	285	306	Right-handed alpha
Helix 50	AF5	C	328	336	Right-handed alpha
Helix 51	AF6	C	340	345	Right-handed 310
Helix 52	AF7	C	346	358	Right-handed alpha
Helix 53	AF8	C	366	379	Right-handed alpha
Helix 54	AF9	C	380	383	Right-handed 310
Helix 55	AG1	C	431	448	Right-handed alpha
Helix 56	AG2	C	457	467	Right-handed alpha
Helix 57	AG3	C	478	487	Right-handed alpha
Helix 58	AG4	C	490	494	Right-handed 310

There are 12 sheets in PDB entry 5YZX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	78	first strand
Strand 2	A	82	89	anti-parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	135	146	parallel
Strand 5	A	120	129	anti-parallel
Strand 6	A	66	78	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	253	261	parallel
Strand 3	A	273	282	anti-parallel
Strand 4	A	471	477	anti-parallel
Strand 5	A	420	427	anti-parallel
Strand 6	A	409	417	anti-parallel
Strand 7	A	387	393	anti-parallel
Strand 8	A	324	327	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	231	235	anti-parallel
Strand 3	A	223	226	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	312	first strand
Strand 2	A	315	318	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	78	first strand
Strand 2	B	82	89	anti-parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	135	146	parallel
Strand 5	B	120	129	anti-parallel
Strand 6	B	66	78	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	253	261	parallel
Strand 3	B	273	282	anti-parallel
Strand 4	B	471	477	anti-parallel
Strand 5	B	420	427	anti-parallel
Strand 6	B	409	417	anti-parallel
Strand 7	B	387	393	anti-parallel
Strand 8	B	324	327	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	211	first strand
Strand 2	B	231	235	anti-parallel
Strand 3	B	223	226	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	312	first strand
Strand 2	B	315	318	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	78	first strand
Strand 2	C	82	89	anti-parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	135	146	parallel
Strand 5	C	120	129	anti-parallel
Strand 6	C	66	78	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	204	first strand
Strand 2	C	253	261	parallel
Strand 3	C	273	282	anti-parallel
Strand 4	C	471	477	anti-parallel
Strand 5	C	420	427	anti-parallel
Strand 6	C	409	417	anti-parallel
Strand 7	C	387	393	anti-parallel
Strand 8	C	324	327	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	231	235	anti-parallel
Strand 3	C	223	226	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	312	first strand
Strand 2	C	315	318	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YZX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YZX