Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z00

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z00 entry

There are 10 chains in PDB entry 5Z00 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 288	T 302
B	T 0	T 14
C	LEU 287	ASN 397
E	A 288	T 302
F	A 1	T 15
G	LEU 287	ASN 397
I	A 288	T 302
J	T 0	T 14
K	LEU 287	ASN 397
M	LEU 287	ASN 397

There are 10 helices in PDB entry 5Z00. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	300	305	Right-handed alpha
Helix 2	AA2	C	313	321	Right-handed alpha
Helix 3	AA3	C	362	370	Right-handed alpha
Helix 4	AA4	G	300	305	Right-handed alpha
Helix 5	AA5	G	313	321	Right-handed alpha
Helix 6	AA6	G	362	369	Right-handed alpha
Helix 7	AA7	K	313	321	Right-handed alpha
Helix 8	AA8	K	362	369	Right-handed alpha
Helix 9	AA9	M	313	321	Right-handed alpha
Helix 10	AB1	M	362	369	Right-handed alpha

There are 4 sheets in PDB entry 5Z00. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	298	first strand
Strand 2	C	376	383	anti-parallel
Strand 3	C	387	393	anti-parallel
Strand 4	C	330	335	parallel
Strand 5	C	341	350	anti-parallel
Strand 6	C	355	360	anti-parallel
Strand 7	C	309	312	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	290	298	first strand
Strand 2	G	376	383	anti-parallel
Strand 3	G	387	393	anti-parallel
Strand 4	G	330	336	parallel
Strand 5	G	341	351	anti-parallel
Strand 6	G	354	360	anti-parallel
Strand 7	G	309	312	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	290	298	first strand
Strand 2	K	376	383	anti-parallel
Strand 3	K	387	393	anti-parallel
Strand 4	K	331	336	parallel
Strand 5	K	341	351	anti-parallel
Strand 6	K	354	360	anti-parallel
Strand 7	K	309	312	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	290	298	first strand
Strand 2	M	376	383	anti-parallel
Strand 3	M	387	393	anti-parallel
Strand 4	M	330	336	parallel
Strand 5	M	341	349	anti-parallel
Strand 6	M	356	360	anti-parallel
Strand 7	M	309	312	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z00

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z00