Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z06

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z06 entry

There are 2 chains in PDB entry 5Z06 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 21	ILE 720
B	LYS 21	ILE 720

There are 46 helices in PDB entry 5Z06. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	115	119	Right-handed 310
Helix 2	AA2	A	138	141	Right-handed 310
Helix 3	AA3	A	157	160	Right-handed 310
Helix 4	AA4	A	168	170	Right-handed 310
Helix 5	AA5	A	300	315	Right-handed alpha
Helix 6	AA6	A	340	356	Right-handed alpha
Helix 7	AA7	A	360	378	Right-handed alpha
Helix 8	AA8	A	409	426	Right-handed alpha
Helix 9	AA9	A	430	446	Right-handed alpha
Helix 10	AB1	A	448	454	Right-handed 310
Helix 11	AB2	A	483	493	Right-handed alpha
Helix 12	AB3	A	501	506	Right-handed alpha
Helix 13	AB4	A	511	523	Right-handed alpha
Helix 14	AB5	A	550	559	Right-handed 310
Helix 15	AB6	A	562	566	Right-handed 310
Helix 16	AB7	A	572	591	Right-handed alpha
Helix 17	AB8	A	620	624	Right-handed 310
Helix 18	AB9	A	630	635	Right-handed alpha
Helix 19	AC1	A	640	654	Right-handed alpha
Helix 20	AC2	A	655	659	Right-handed alpha
Helix 21	AC3	A	682	698	Right-handed alpha
Helix 22	AC4	A	698	706	Right-handed alpha
Helix 23	AC5	A	707	720	Right-handed alpha
Helix 24	AC6	B	115	119	Right-handed 310
Helix 25	AC7	B	138	141	Right-handed 310
Helix 26	AC8	B	157	160	Right-handed 310
Helix 27	AC9	B	168	170	Right-handed 310
Helix 28	AD1	B	300	317	Right-handed alpha
Helix 29	AD2	B	340	356	Right-handed alpha
Helix 30	AD3	B	360	378	Right-handed alpha
Helix 31	AD4	B	409	426	Right-handed alpha
Helix 32	AD5	B	430	446	Right-handed alpha
Helix 33	AD6	B	448	454	Right-handed 310
Helix 34	AD7	B	483	493	Right-handed alpha
Helix 35	AD8	B	501	506	Right-handed alpha
Helix 36	AD9	B	511	523	Right-handed alpha
Helix 37	AE1	B	550	559	Right-handed 310
Helix 38	AE2	B	562	566	Right-handed 310
Helix 39	AE3	B	572	591	Right-handed alpha
Helix 40	AE4	B	620	624	Right-handed 310
Helix 41	AE5	B	630	635	Right-handed alpha
Helix 42	AE6	B	640	654	Right-handed alpha
Helix 43	AE7	B	655	659	Right-handed alpha
Helix 44	AE8	B	682	698	Right-handed alpha
Helix 45	AE9	B	698	706	Right-handed alpha
Helix 46	AF1	B	707	719	Right-handed alpha

There are 24 sheets in PDB entry 5Z06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	186	197	anti-parallel
Strand 3	A	70	76	anti-parallel
Strand 4	A	59	60	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	70	76	anti-parallel
Strand 3	A	186	197	anti-parallel
Strand 4	A	103	110	anti-parallel
Strand 5	A	149	155	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	45	first strand
Strand 2	A	82	88	anti-parallel
Strand 3	A	172	178	anti-parallel
Strand 4	A	121	126	anti-parallel
Strand 5	A	135	136	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	217	first strand
Strand 2	A	221	227	anti-parallel
Strand 3	A	260	264	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	254	first strand
Strand 2	A	236	242	anti-parallel
Strand 3	A	271	279	anti-parallel
Strand 4	A	292	295	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	331	first strand
Strand 2	A	680	681	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	388	390	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	464	465	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	536	first strand
Strand 2	A	539	540	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	607	609	first strand
Strand 2	A	614	616	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	628	first strand
Strand 2	A	669	670	anti-parallel
Strand 3	A	675	676	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	661	first strand
Strand 2	A	664	665	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	28	first strand
Strand 2	B	186	197	anti-parallel
Strand 3	B	70	76	anti-parallel
Strand 4	B	59	60	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	70	76	anti-parallel
Strand 3	B	186	197	anti-parallel
Strand 4	B	103	110	anti-parallel
Strand 5	B	149	155	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	45	first strand
Strand 2	B	82	88	anti-parallel
Strand 3	B	172	178	anti-parallel
Strand 4	B	121	126	anti-parallel
Strand 5	B	135	136	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	217	first strand
Strand 2	B	221	227	anti-parallel
Strand 3	B	260	264	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	254	first strand
Strand 2	B	236	242	anti-parallel
Strand 3	B	271	279	anti-parallel
Strand 4	B	292	295	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	331	first strand
Strand 2	B	680	681	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	388	390	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	464	465	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	536	first strand
Strand 2	B	539	540	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	607	609	first strand
Strand 2	B	614	616	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	627	628	first strand
Strand 2	B	669	670	anti-parallel
Strand 3	B	675	676	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	660	661	first strand
Strand 2	B	664	665	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z06

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z06