Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z08 entry

There are 4 chains in PDB entry 5Z08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8ALA 229
B
 GLY 8ALA 229
C
 ARG 161ASP 328
D
 HIS 184PRO 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5Z08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 21Right-handed alpha
Helix 2
AA2
A
22 27Right-handed 310
Helix 3
AA3
A
31 46Right-handed alpha
Helix 4
AA4
A
48 61Right-handed alpha
Helix 5
AA5
A
66 75Right-handed alpha
Helix 6
AA6
A
84 93Right-handed alpha
Helix 7
AA7
A
103 118Right-handed alpha
Helix 8
AA8
A
119 121Right-handed 310
Helix 9
AA9
A
125 130Right-handed alpha
Helix 10
AB1
A
130 136Right-handed alpha
Helix 11
AB2
A
140 142Right-handed 310
Helix 12
AB3
A
143 155Right-handed alpha
Helix 13
AB4
A
156 160Right-handed 310
Helix 14
AB5
A
161 175Right-handed alpha
Helix 15
AB6
A
178 192Right-handed alpha
Helix 16
AB7
A
212 224Right-handed alpha
Helix 17
AB8
A
225 228Right-handed 310
Helix 18
AB9
B
9 21Right-handed alpha
Helix 19
AC1
B
22 27Right-handed 310
Helix 20
AC2
B
31 46Right-handed alpha
Helix 21
AC3
B
48 61Right-handed alpha
Helix 22
AC4
B
66 76Right-handed alpha
Helix 23
AC5
B
84 94Right-handed alpha
Helix 24
AC6
B
103 117Right-handed alpha
Helix 25
AC7
B
118 121Right-handed 310
Helix 26
AC8
B
124 130Right-handed alpha
Helix 27
AC9
B
130 136Right-handed alpha
Helix 28
AD1
B
143 155Right-handed alpha
Helix 29
AD2
B
156 160Right-handed 310
Helix 30
AD3
B
161 175Right-handed alpha
Helix 31
AD4
B
178 192Right-handed alpha
Helix 32
AD5
B
212 224Right-handed alpha
Helix 33
AD6
B
225 228Right-handed 310
Helix 34
AD7
C
162 184Right-handed alpha
Helix 35
AD8
C
184 191Right-handed alpha
Helix 36
AD9
C
259 281Right-handed alpha
Helix 37
AE1
C
283 287Right-handed 310
Helix 38
AE2
C
295 304Right-handed alpha
Helix 39
AE3
D
185 208Right-handed alpha
Helix 40
AE4
D
216 224Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5Z08.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
289 290first strand
Strand 2
C
316 319anti-parallel
Strand 3
C
307 309anti-parallel
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