Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z09

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z09 entry

There are 6 chains in PDB entry 5Z09 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 401
B	MET 1	VAL 401
C	MET 1	VAL 401
D	MET 1	VAL 401
E	MET 1	VAL 401
F	MET 1	VAL 401

There are 51 helices in PDB entry 5Z09. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	20	Right-handed 310
Helix 2	AA2	A	22	25	Right-handed 310
Helix 3	AA3	A	33	43	Right-handed alpha
Helix 4	AA4	A	59	65	Right-handed alpha
Helix 5	AA5	A	79	86	Right-handed alpha
Helix 6	AA6	A	105	112	Right-handed alpha
Helix 7	AA7	A	165	174	Right-handed alpha
Helix 8	AA8	A	183	192	Right-handed alpha
Helix 9	AA9	A	212	226	Right-handed alpha
Helix 10	AB1	B	11	15	Right-handed 310
Helix 11	AB2	B	16	20	Right-handed 310
Helix 12	AB3	B	22	25	Right-handed 310
Helix 13	AB4	B	33	43	Right-handed alpha
Helix 14	AB5	B	60	65	Right-handed alpha
Helix 15	AB6	B	79	86	Right-handed alpha
Helix 16	AB7	B	105	112	Right-handed alpha
Helix 17	AB8	B	166	174	Right-handed alpha
Helix 18	AB9	B	183	192	Right-handed alpha
Helix 19	AC1	B	212	226	Right-handed alpha
Helix 20	AC2	C	16	20	Right-handed 310
Helix 21	AC3	C	22	25	Right-handed 310
Helix 22	AC4	C	33	43	Right-handed alpha
Helix 23	AC5	C	60	65	Right-handed alpha
Helix 24	AC6	C	79	86	Right-handed alpha
Helix 25	AC7	C	105	112	Right-handed alpha
Helix 26	AC8	C	166	174	Right-handed alpha
Helix 27	AC9	C	183	192	Right-handed alpha
Helix 28	AD1	C	212	226	Right-handed alpha
Helix 29	AD2	D	11	15	Right-handed 310
Helix 30	AD3	D	16	20	Right-handed 310
Helix 31	AD4	D	22	25	Right-handed 310
Helix 32	AD5	D	33	43	Right-handed alpha
Helix 33	AD6	D	60	65	Right-handed alpha
Helix 34	AD7	D	79	87	Right-handed alpha
Helix 35	AD8	D	105	112	Right-handed alpha
Helix 36	AD9	D	166	174	Right-handed alpha
Helix 37	AE1	D	183	192	Right-handed alpha
Helix 38	AE2	D	212	226	Right-handed alpha
Helix 39	AE3	E	11	15	Right-handed 310
Helix 40	AE4	E	16	20	Right-handed 310
Helix 41	AE5	E	22	25	Right-handed 310
Helix 42	AE6	E	33	43	Right-handed alpha
Helix 43	AE7	E	60	65	Right-handed alpha
Helix 44	AE8	E	105	112	Right-handed alpha
Helix 45	AE9	E	212	226	Right-handed alpha
Helix 46	AF1	F	16	20	Right-handed 310
Helix 47	AF2	F	22	25	Right-handed 310
Helix 48	AF3	F	33	43	Right-handed alpha
Helix 49	AF4	F	60	65	Right-handed alpha
Helix 50	AF5	F	105	112	Right-handed alpha
Helix 51	AF6	F	212	226	Right-handed alpha

There are 60 sheets in PDB entry 5Z09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	72	first strand
Strand 2	A	49	53	parallel
Strand 3	A	3	6	parallel
Strand 4	A	92	97	parallel
Strand 5	A	155	164	anti-parallel
Strand 6	A	118	123	anti-parallel
Strand 7	A	198	201	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	31	32	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	206	208	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	135	first strand
Strand 2	A	141	146	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	245	247	parallel
Strand 3	A	263	265	parallel
Strand 4	A	281	283	parallel
Strand 5	A	298	300	parallel
Strand 6	A	316	317	parallel
Strand 7	A	358	359	parallel
Strand 8	A	376	377	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	A	252	253	parallel
Strand 3	A	270	271	parallel
Strand 4	A	288	296	parallel
Strand 5	A	276	277	parallel
Strand 6	A	258	260	parallel
Strand 7	A	240	242	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	A	252	253	parallel
Strand 3	A	270	271	parallel
Strand 4	A	288	296	parallel
Strand 5	A	305	313	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	A	364	365	parallel
Strand 3	A	382	383	parallel
Strand 4	A	398	399	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	370	371	parallel
Strand 3	A	388	389	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	343	first strand
Strand 2	A	346	349	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	72	first strand
Strand 2	B	49	53	parallel
Strand 3	B	3	6	parallel
Strand 4	B	92	97	parallel
Strand 5	B	155	164	anti-parallel
Strand 6	B	118	123	anti-parallel
Strand 7	B	198	201	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	31	32	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	206	208	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	135	first strand
Strand 2	B	141	146	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	231	first strand
Strand 2	B	245	247	parallel
Strand 3	B	263	265	parallel
Strand 4	B	281	283	parallel
Strand 5	B	298	300	parallel
Strand 6	B	316	317	parallel
Strand 7	B	358	359	parallel
Strand 8	B	376	377	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	235	first strand
Strand 2	B	252	253	parallel
Strand 3	B	270	271	parallel
Strand 4	B	288	296	parallel
Strand 5	B	276	277	parallel
Strand 6	B	258	260	parallel
Strand 7	B	240	242	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	235	first strand
Strand 2	B	252	253	parallel
Strand 3	B	270	271	parallel
Strand 4	B	288	296	parallel
Strand 5	B	305	313	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	329	first strand
Strand 2	B	370	371	parallel
Strand 3	B	388	389	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	343	first strand
Strand 2	B	346	349	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	382	383	parallel
Strand 3	B	398	399	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	C	49	53	parallel
Strand 3	C	3	6	parallel
Strand 4	C	92	97	parallel
Strand 5	C	155	164	anti-parallel
Strand 6	C	117	123	anti-parallel
Strand 7	C	197	201	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	31	32	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	206	208	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	135	first strand
Strand 2	C	141	146	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	231	first strand
Strand 2	C	245	247	parallel
Strand 3	C	263	265	parallel
Strand 4	C	281	283	parallel
Strand 5	C	298	300	parallel
Strand 6	C	316	317	parallel
Strand 7	C	358	359	parallel
Strand 8	C	376	377	parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	235	first strand
Strand 2	C	252	253	parallel
Strand 3	C	270	271	parallel
Strand 4	C	288	296	parallel
Strand 5	C	276	277	parallel
Strand 6	C	258	260	parallel
Strand 7	C	240	242	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	235	first strand
Strand 2	C	252	253	parallel
Strand 3	C	270	271	parallel
Strand 4	C	288	296	parallel
Strand 5	C	305	313	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	323	first strand
Strand 2	C	364	365	parallel
Strand 3	C	382	383	parallel
Strand 4	C	398	399	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	329	first strand
Strand 2	C	370	371	parallel
Strand 3	C	388	389	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	343	first strand
Strand 2	C	346	349	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	72	first strand
Strand 2	D	49	53	parallel
Strand 3	D	3	6	parallel
Strand 4	D	92	97	parallel
Strand 5	D	155	164	anti-parallel
Strand 6	D	118	123	anti-parallel
Strand 7	D	198	201	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	28	first strand
Strand 2	D	31	32	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	206	208	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	135	first strand
Strand 2	D	141	146	anti-parallel

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There are 8 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	231	first strand
Strand 2	D	245	247	parallel
Strand 3	D	263	265	parallel
Strand 4	D	281	283	parallel
Strand 5	D	298	300	parallel
Strand 6	D	316	317	parallel
Strand 7	D	358	359	parallel
Strand 8	D	376	377	parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	252	253	parallel
Strand 3	D	270	271	parallel
Strand 4	D	288	296	parallel
Strand 5	D	276	277	parallel
Strand 6	D	258	260	parallel
Strand 7	D	240	242	parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	252	253	parallel
Strand 3	D	270	271	parallel
Strand 4	D	288	296	parallel
Strand 5	D	305	313	parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	322	323	first strand
Strand 2	D	364	365	parallel
Strand 3	D	382	383	parallel
Strand 4	D	398	399	parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	329	first strand
Strand 2	D	370	371	parallel
Strand 3	D	388	389	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	343	first strand
Strand 2	D	346	349	anti-parallel

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There are 7 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	72	first strand
Strand 2	E	49	53	parallel
Strand 3	E	3	7	parallel
Strand 4	E	93	97	parallel
Strand 5	E	155	163	anti-parallel
Strand 6	E	117	123	anti-parallel
Strand 7	E	197	201	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	28	first strand
Strand 2	E	31	32	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	102	first strand
Strand 2	E	206	208	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	132	first strand
Strand 2	E	145	146	anti-parallel

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There are 8 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	231	first strand
Strand 2	E	245	247	parallel
Strand 3	E	263	265	parallel
Strand 4	E	281	283	parallel
Strand 5	E	298	300	parallel
Strand 6	E	316	317	parallel
Strand 7	E	358	359	parallel
Strand 8	E	376	377	parallel

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There are 7 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	234	235	first strand
Strand 2	E	252	253	parallel
Strand 3	E	270	271	parallel
Strand 4	E	288	296	parallel
Strand 5	E	276	277	parallel
Strand 6	E	258	260	parallel
Strand 7	E	240	242	parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	234	235	first strand
Strand 2	E	252	253	parallel
Strand 3	E	270	271	parallel
Strand 4	E	288	296	parallel
Strand 5	E	305	313	parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	322	323	first strand
Strand 2	E	364	365	parallel
Strand 3	E	382	383	parallel
Strand 4	E	398	399	parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	328	329	first strand
Strand 2	E	370	371	parallel
Strand 3	E	388	389	parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	340	343	first strand
Strand 2	E	346	349	anti-parallel

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There are 6 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	72	first strand
Strand 2	F	49	53	parallel
Strand 3	F	3	6	parallel
Strand 4	F	94	97	parallel
Strand 5	F	155	162	anti-parallel
Strand 6	F	118	123	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	28	first strand
Strand 2	F	31	32	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	102	first strand
Strand 2	F	206	208	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	135	first strand
Strand 2	F	141	146	anti-parallel

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There are 8 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	230	231	first strand
Strand 2	F	245	247	parallel
Strand 3	F	263	265	parallel
Strand 4	F	281	283	parallel
Strand 5	F	298	300	parallel
Strand 6	F	316	317	parallel
Strand 7	F	358	359	parallel
Strand 8	F	376	377	parallel

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There are 7 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	234	235	first strand
Strand 2	F	252	253	parallel
Strand 3	F	270	271	parallel
Strand 4	F	288	296	parallel
Strand 5	F	276	277	parallel
Strand 6	F	258	260	parallel
Strand 7	F	240	242	parallel

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There are 5 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	234	235	first strand
Strand 2	F	252	253	parallel
Strand 3	F	270	271	parallel
Strand 4	F	288	296	parallel
Strand 5	F	305	313	parallel

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There are 4 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	322	323	first strand
Strand 2	F	364	365	parallel
Strand 3	F	382	383	parallel
Strand 4	F	398	399	parallel

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There are 3 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	328	329	first strand
Strand 2	F	370	371	parallel
Strand 3	F	388	389	parallel

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There are 2 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	340	343	first strand
Strand 2	F	346	349	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z09

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z09