Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z0R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z0R entry

There are 2 chains in PDB entry 5Z0R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	ARG 445
B	MET 1	ARG 445

There are 41 helices in PDB entry 5Z0R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	33	Right-handed alpha
Helix 2	AA2	A	43	52	Right-handed alpha
Helix 3	AA3	A	67	74	Right-handed alpha
Helix 4	AA4	A	83	88	Right-handed alpha
Helix 5	AA5	A	91	98	Right-handed alpha
Helix 6	AA6	A	132	142	Right-handed alpha
Helix 7	AA7	A	154	163	Right-handed alpha
Helix 8	AA8	A	186	202	Right-handed alpha
Helix 9	AA9	A	210	220	Right-handed alpha
Helix 10	AB1	A	229	231	Right-handed 310
Helix 11	AB2	A	232	240	Right-handed alpha
Helix 12	AB3	A	273	284	Right-handed alpha
Helix 13	AB4	A	287	296	Right-handed alpha
Helix 14	AB5	A	305	313	Right-handed alpha
Helix 15	AB6	A	315	328	Right-handed alpha
Helix 16	AB7	A	336	353	Right-handed alpha
Helix 17	AB8	A	357	371	Right-handed alpha
Helix 18	AB9	A	390	404	Right-handed alpha
Helix 19	AC1	A	409	419	Right-handed alpha
Helix 20	AC2	A	420	444	Right-handed alpha
Helix 21	AC3	B	17	33	Right-handed alpha
Helix 22	AC4	B	43	52	Right-handed alpha
Helix 23	AC5	B	67	75	Right-handed alpha
Helix 24	AC6	B	83	88	Right-handed alpha
Helix 25	AC7	B	91	98	Right-handed alpha
Helix 26	AC8	B	132	142	Right-handed alpha
Helix 27	AC9	B	154	165	Right-handed alpha
Helix 28	AD1	B	186	202	Right-handed alpha
Helix 29	AD2	B	210	220	Right-handed alpha
Helix 30	AD3	B	229	231	Right-handed 310
Helix 31	AD4	B	232	240	Right-handed alpha
Helix 32	AD5	B	273	284	Right-handed alpha
Helix 33	AD6	B	287	298	Right-handed alpha
Helix 34	AD7	B	305	313	Right-handed alpha
Helix 35	AD8	B	315	328	Right-handed alpha
Helix 36	AD9	B	336	353	Right-handed alpha
Helix 37	AE1	B	357	372	Right-handed alpha
Helix 38	AE2	B	373	375	Right-handed 310
Helix 39	AE3	B	390	404	Right-handed alpha
Helix 40	AE4	B	409	419	Right-handed alpha
Helix 41	AE5	B	420	444	Right-handed alpha

There are 11 sheets in PDB entry 5Z0R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	8	11	parallel
Strand 3	A	60	64	parallel
Strand 4	A	259	267	anti-parallel
Strand 5	A	107	112	anti-parallel
Strand 6	A	302	303	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	8	11	parallel
Strand 3	A	60	64	parallel
Strand 4	A	259	267	anti-parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	103	104	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	223	228	parallel
Strand 3	A	115	119	anti-parallel
Strand 4	A	243	246	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	173	first strand
Strand 2	A	176	183	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	251	first strand
Strand 2	A	254	255	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	7	11	parallel
Strand 3	B	60	64	parallel
Strand 4	B	259	267	anti-parallel
Strand 5	B	107	112	anti-parallel
Strand 6	B	302	303	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	7	11	parallel
Strand 3	B	60	64	parallel
Strand 4	B	259	267	anti-parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	103	104	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	223	228	parallel
Strand 3	B	115	119	anti-parallel
Strand 4	B	243	246	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	173	first strand
Strand 2	B	176	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z0R

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z0R