Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z0T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z0T entry

There are 2 chains in PDB entry 5Z0T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	GLN 637
B	ALA 1	GLN 637

There are 49 helices in PDB entry 5Z0T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	12	Right-handed 310
Helix 2	AA2	A	127	133	Right-handed alpha
Helix 3	AA3	A	139	143	Right-handed 310
Helix 4	AA4	A	147	151	Right-handed 310
Helix 5	AA5	A	180	182	Right-handed 310
Helix 6	AA6	A	189	196	Right-handed alpha
Helix 7	AA7	A	196	202	Right-handed alpha
Helix 8	AA8	A	237	250	Right-handed alpha
Helix 9	AA9	A	294	298	Right-handed 310
Helix 10	AB1	A	309	313	Right-handed 310
Helix 11	AB2	A	326	333	Right-handed alpha
Helix 12	AB3	A	338	345	Right-handed alpha
Helix 13	AB4	A	357	361	Right-handed 310
Helix 14	AB5	A	370	388	Right-handed alpha
Helix 15	AB6	A	401	405	Right-handed 310
Helix 16	AB7	A	420	430	Right-handed alpha
Helix 17	AB8	A	441	454	Right-handed alpha
Helix 18	AB9	A	457	462	Right-handed alpha
Helix 19	AC1	A	475	480	Right-handed alpha
Helix 20	AC2	A	483	497	Right-handed alpha
Helix 21	AC3	A	506	510	Right-handed 310
Helix 22	AC4	A	532	548	Right-handed alpha
Helix 23	AC5	A	548	554	Right-handed alpha
Helix 24	AC6	A	595	600	Right-handed 310
Helix 25	AC7	B	8	12	Right-handed 310
Helix 26	AC8	B	127	133	Right-handed alpha
Helix 27	AC9	B	139	143	Right-handed 310
Helix 28	AD1	B	147	151	Right-handed 310
Helix 29	AD2	B	180	182	Right-handed 310
Helix 30	AD3	B	189	196	Right-handed alpha
Helix 31	AD4	B	196	202	Right-handed alpha
Helix 32	AD5	B	237	250	Right-handed alpha
Helix 33	AD6	B	294	298	Right-handed 310
Helix 34	AD7	B	309	313	Right-handed 310
Helix 35	AD8	B	326	333	Right-handed alpha
Helix 36	AD9	B	338	345	Right-handed alpha
Helix 37	AE1	B	357	361	Right-handed 310
Helix 38	AE2	B	370	388	Right-handed alpha
Helix 39	AE3	B	401	405	Right-handed 310
Helix 40	AE4	B	420	429	Right-handed alpha
Helix 41	AE5	B	441	454	Right-handed alpha
Helix 42	AE6	B	457	462	Right-handed alpha
Helix 43	AE7	B	475	480	Right-handed alpha
Helix 44	AE8	B	483	497	Right-handed alpha
Helix 45	AE9	B	506	510	Right-handed 310
Helix 46	AF1	B	524	528	Right-handed 310
Helix 47	AF2	B	532	548	Right-handed alpha
Helix 48	AF3	B	548	554	Right-handed alpha
Helix 49	AF4	B	595	600	Right-handed 310

There are 20 sheets in PDB entry 5Z0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	39	first strand
Strand 2	A	74	81	anti-parallel
Strand 3	A	64	68	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	62	first strand
Strand 2	A	45	52	anti-parallel
Strand 3	A	88	96	anti-parallel
Strand 4	A	99	104	anti-parallel
Strand 5	A	107	109	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	62	first strand
Strand 2	A	45	52	anti-parallel
Strand 3	A	88	96	anti-parallel
Strand 4	A	118	120	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	413	414	first strand
Strand 2	A	392	395	parallel
Strand 3	A	352	355	parallel
Strand 4	A	258	263	parallel
Strand 5	A	208	211	parallel
Strand 6	A	135	138	parallel
Strand 7	A	500	504	parallel
Strand 8	A	465	467	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	162	163	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	166	first strand
Strand 2	A	184	185	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	A	227	231	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	302	first strand
Strand 2	A	306	307	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	562	first strand
Strand 2	A	567	573	anti-parallel
Strand 3	A	578	584	anti-parallel
Strand 4	A	631	637	anti-parallel
Strand 5	A	606	609	anti-parallel
Strand 6	A	615	617	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	594	first strand
Strand 2	A	623	627	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	39	first strand
Strand 2	B	74	81	anti-parallel
Strand 3	B	64	68	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	62	first strand
Strand 2	B	45	52	anti-parallel
Strand 3	B	88	96	anti-parallel
Strand 4	B	99	104	anti-parallel
Strand 5	B	107	109	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	62	first strand
Strand 2	B	45	52	anti-parallel
Strand 3	B	88	96	anti-parallel
Strand 4	B	118	120	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	413	414	first strand
Strand 2	B	392	395	parallel
Strand 3	B	352	355	parallel
Strand 4	B	258	263	parallel
Strand 5	B	208	211	parallel
Strand 6	B	135	138	parallel
Strand 7	B	500	504	parallel
Strand 8	B	465	467	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	159	first strand
Strand 2	B	162	163	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	166	first strand
Strand 2	B	184	185	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	216	first strand
Strand 2	B	227	231	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	302	first strand
Strand 2	B	306	307	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	555	562	first strand
Strand 2	B	567	573	anti-parallel
Strand 3	B	578	584	anti-parallel
Strand 4	B	631	637	anti-parallel
Strand 5	B	606	609	anti-parallel
Strand 6	B	615	617	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	594	first strand
Strand 2	B	623	627	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z0T

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z0T