Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z0U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z0U entry

There is 1 chain in PDB entry 5Z0U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 637
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 5Z0U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 12Right-handed 310
Helix 2
AA2
A
127 133Right-handed alpha
Helix 3
AA3
A
139 144Right-handed alpha
Helix 4
AA4
A
147 151Right-handed 310
Helix 5
AA5
A
180 182Right-handed 310
Helix 6
AA6
A
189 196Right-handed alpha
Helix 7
AA7
A
196 202Right-handed alpha
Helix 8
AA8
A
237 250Right-handed alpha
Helix 9
AA9
A
294 298Right-handed 310
Helix 10
AB1
A
326 333Right-handed alpha
Helix 11
AB2
A
338 345Right-handed alpha
Helix 12
AB3
A
357 361Right-handed 310
Helix 13
AB4
A
362 388Right-handed alpha
Helix 14
AB5
A
401 405Right-handed 310
Helix 15
AB6
A
420 430Right-handed alpha
Helix 16
AB7
A
441 454Right-handed alpha
Helix 17
AB8
A
457 464Right-handed alpha
Helix 18
AB9
A
475 480Right-handed alpha
Helix 19
AC1
A
483 497Right-handed alpha
Helix 20
AC2
A
506 510Right-handed 310
Helix 21
AC3
A
524 528Right-handed 310
Helix 22
AC4
A
532 548Right-handed alpha
Helix 23
AC5
A
548 554Right-handed alpha
Helix 24
AC6
A
595 600Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 5Z0U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 39first strand
Strand 2
A
74 81anti-parallel
Strand 3
A
64 68anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 62first strand
Strand 2
A
45 52anti-parallel
Strand 3
A
88 96anti-parallel
Strand 4
A
99 104anti-parallel
Strand 5
A
107 109anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 62first strand
Strand 2
A
45 52anti-parallel
Strand 3
A
88 96anti-parallel
Strand 4
A
118 120anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 414first strand
Strand 2
A
392 395parallel
Strand 3
A
352 355parallel
Strand 4
A
258 263parallel
Strand 5
A
208 211parallel
Strand 6
A
135 138parallel
Strand 7
A
500 504parallel
Strand 8
A
465 467parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
162 163anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
184 185parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
227 231anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 302first strand
Strand 2
A
306 307anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 562first strand
Strand 2
A
567 573anti-parallel
Strand 3
A
578 584anti-parallel
Strand 4
A
631 637anti-parallel
Strand 5
A
606 609anti-parallel
Strand 6
A
615 617anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 594first strand
Strand 2
A
623 627anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il