Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z15

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z15 entry

There are 2 chains in PDB entry 5Z15 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 32	LEU 817
B	SER 33	GLU 818

There are 28 helices in PDB entry 5Z15. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	162	167	Right-handed alpha
Helix 2	AA2	A	303	308	Right-handed 310
Helix 3	AA3	A	323	329	Right-handed alpha
Helix 4	AA4	A	330	336	Right-handed 310
Helix 5	AA5	A	360	366	Right-handed 310
Helix 6	AA6	A	383	392	Right-handed 310
Helix 7	AA7	A	411	417	Right-handed 310
Helix 8	AA8	A	476	481	Right-handed alpha
Helix 9	AA9	A	578	583	Right-handed 310
Helix 10	AB1	A	619	626	Right-handed alpha
Helix 11	AB2	A	655	661	Right-handed alpha
Helix 12	AB3	A	680	686	Right-handed 310
Helix 13	AB4	A	780	790	Right-handed alpha
Helix 14	AB5	A	797	801	Right-handed 310
Helix 15	AB6	B	162	167	Right-handed alpha
Helix 16	AB7	B	303	308	Right-handed 310
Helix 17	AB8	B	323	329	Right-handed alpha
Helix 18	AB9	B	331	336	Right-handed 310
Helix 19	AC1	B	360	365	Right-handed 310
Helix 20	AC2	B	383	388	Right-handed 310
Helix 21	AC3	B	411	416	Right-handed 310
Helix 22	AC4	B	476	481	Right-handed alpha
Helix 23	AC5	B	578	583	Right-handed alpha
Helix 24	AC6	B	619	625	Right-handed alpha
Helix 25	AC7	B	655	661	Right-handed alpha
Helix 26	AC8	B	706	711	Right-handed alpha
Helix 27	AC9	B	781	790	Right-handed alpha
Helix 28	AD1	B	797	801	Right-handed 310

There are 13 sheets in PDB entry 5Z15. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 28 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	41	first strand
Strand 2	A	44	48	anti-parallel
Strand 3	A	67	69	parallel
Strand 4	A	91	93	parallel
Strand 5	A	129	131	parallel
Strand 6	A	150	152	parallel
Strand 7	A	174	176	parallel
Strand 8	A	205	207	parallel
Strand 9	A	226	228	parallel
Strand 10	A	250	252	parallel
Strand 11	A	291	293	parallel
Strand 12	A	315	317	parallel
Strand 13	A	341	343	parallel
Strand 14	A	371	373	parallel
Strand 15	A	398	400	parallel
Strand 16	A	422	424	parallel
Strand 17	A	485	487	parallel
Strand 18	A	509	511	parallel
Strand 19	A	534	536	parallel
Strand 20	A	558	560	parallel
Strand 21	A	588	590	parallel
Strand 22	A	612	614	parallel
Strand 23	A	643	645	parallel
Strand 24	A	668	670	parallel
Strand 25	A	692	694	parallel
Strand 26	A	716	718	parallel
Strand 27	A	740	742	parallel
Strand 28	A	766	768	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	115	116	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	161	first strand
Strand 2	A	191	192	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	277	278	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	382	first strand
Strand 2	A	408	409	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	774	775	first strand
Strand 2	A	803	805	parallel

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There are 28 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	46	48	anti-parallel
Strand 3	B	67	69	parallel
Strand 4	B	91	93	parallel
Strand 5	B	129	131	parallel
Strand 6	B	150	152	parallel
Strand 7	B	174	176	parallel
Strand 8	B	205	207	parallel
Strand 9	B	226	228	parallel
Strand 10	B	250	252	parallel
Strand 11	B	291	293	parallel
Strand 12	B	315	317	parallel
Strand 13	B	341	343	parallel
Strand 14	B	371	373	parallel
Strand 15	B	398	400	parallel
Strand 16	B	422	424	parallel
Strand 17	B	485	487	parallel
Strand 18	B	509	511	parallel
Strand 19	B	534	536	parallel
Strand 20	B	558	560	parallel
Strand 21	B	588	590	parallel
Strand 22	B	612	614	parallel
Strand 23	B	643	645	parallel
Strand 24	B	668	670	parallel
Strand 25	B	692	694	parallel
Strand 26	B	716	718	parallel
Strand 27	B	740	742	parallel
Strand 28	B	766	768	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	115	116	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	191	192	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	277	278	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	382	first strand
Strand 2	B	408	409	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	607	first strand
Strand 2	B	637	638	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	774	775	first strand
Strand 2	B	803	805	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z15

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z15