Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z16

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z16 entry

There are 2 chains in PDB entry 5Z16 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 5	ALA 739
B	SER 6	GLN 744

There are 67 helices in PDB entry 5Z16. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	25	Right-handed alpha
Helix 2	AA2	A	26	31	Right-handed alpha
Helix 3	AA3	A	32	35	Right-handed 310
Helix 4	AA4	A	45	54	Right-handed alpha
Helix 5	AA5	A	55	58	Right-handed 310
Helix 6	AA6	A	66	75	Right-handed alpha
Helix 7	AA7	A	125	129	Right-handed 310
Helix 8	AA8	A	136	141	Right-handed alpha
Helix 9	AA9	A	150	160	Right-handed alpha
Helix 10	AB1	A	183	187	Right-handed 310
Helix 11	AB2	A	230	249	Right-handed alpha
Helix 12	AB3	A	263	277	Right-handed alpha
Helix 13	AB4	A	277	292	Right-handed alpha
Helix 14	AB5	A	294	297	Right-handed 310
Helix 15	AB6	A	298	306	Right-handed alpha
Helix 16	AB7	A	310	323	Right-handed alpha
Helix 17	AB8	A	324	327	Right-handed 310
Helix 18	AB9	A	350	361	Right-handed alpha
Helix 19	AC1	A	381	384	Right-handed 310
Helix 20	AC2	A	385	399	Right-handed alpha
Helix 21	AC3	A	419	426	Right-handed 310
Helix 22	AC4	A	465	482	Right-handed alpha
Helix 23	AC5	A	495	510	Right-handed alpha
Helix 24	AC6	A	523	537	Right-handed alpha
Helix 25	AC7	A	546	563	Right-handed alpha
Helix 26	AC8	A	589	597	Right-handed 310
Helix 27	AC9	A	606	624	Right-handed alpha
Helix 28	AD1	A	626	646	Right-handed alpha
Helix 29	AD2	A	657	676	Right-handed alpha
Helix 30	AD3	A	692	697	Right-handed alpha
Helix 31	AD4	A	700	705	Right-handed alpha
Helix 32	AD5	A	726	731	Right-handed alpha
Helix 33	AD6	A	734	739	Right-handed alpha
Helix 34	AD7	B	14	33	Right-handed alpha
Helix 35	AD8	B	34	36	Right-handed 310
Helix 36	AD9	B	45	54	Right-handed alpha
Helix 37	AE1	B	55	58	Right-handed 310
Helix 38	AE2	B	59	63	Right-handed 310
Helix 39	AE3	B	66	75	Right-handed alpha
Helix 40	AE4	B	91	105	Right-handed alpha
Helix 41	AE5	B	119	128	Right-handed alpha
Helix 42	AE6	B	135	141	Right-handed alpha
Helix 43	AE7	B	150	160	Right-handed alpha
Helix 44	AE8	B	182	187	Right-handed alpha
Helix 45	AE9	B	230	248	Right-handed alpha
Helix 46	AF1	B	263	277	Right-handed alpha
Helix 47	AF2	B	277	292	Right-handed alpha
Helix 48	AF3	B	294	297	Right-handed 310
Helix 49	AF4	B	298	307	Right-handed alpha
Helix 50	AF5	B	310	323	Right-handed alpha
Helix 51	AF6	B	324	327	Right-handed 310
Helix 52	AF7	B	350	361	Right-handed alpha
Helix 53	AF8	B	381	399	Right-handed alpha
Helix 54	AF9	B	419	426	Right-handed 310
Helix 55	AG1	B	465	482	Right-handed alpha
Helix 56	AG2	B	495	509	Right-handed alpha
Helix 57	AG3	B	510	512	Right-handed 310
Helix 58	AG4	B	523	536	Right-handed alpha
Helix 59	AG5	B	546	563	Right-handed alpha
Helix 60	AG6	B	589	600	Right-handed alpha
Helix 61	AG7	B	606	624	Right-handed alpha
Helix 62	AG8	B	626	646	Right-handed alpha
Helix 63	AG9	B	658	677	Right-handed alpha
Helix 64	AH1	B	680	697	Right-handed alpha
Helix 65	AH2	B	697	707	Right-handed alpha
Helix 66	AH3	B	722	731	Right-handed alpha
Helix 67	AH4	B	733	741	Right-handed alpha

There are 13 sheets in PDB entry 5Z16. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	7	first strand
Strand 2	A	37	38	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	9	12	parallel
Strand 3	A	81	84	parallel
Strand 4	A	579	582	parallel
Strand 5	A	569	573	anti-parallel
Strand 6	A	145	148	anti-parallel
Strand 7	A	411	413	anti-parallel
Strand 8	A	542	545	parallel
Strand 9	A	487	490	parallel
Strand 10	A	519	522	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	375	378	parallel
Strand 3	A	251	254	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	191	first strand
Strand 2	A	223	229	anti-parallel
Strand 3	A	458	464	anti-parallel
Strand 4	A	428	430	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	218	first strand
Strand 2	A	196	204	anti-parallel
Strand 3	A	435	441	anti-parallel
Strand 4	A	447	453	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	335	first strand
Strand 2	A	340	341	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	372	373	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	43	first strand
Strand 2	B	7	12	parallel
Strand 3	B	81	84	parallel
Strand 4	B	579	582	parallel
Strand 5	B	569	573	anti-parallel
Strand 6	B	145	148	anti-parallel
Strand 7	B	411	413	anti-parallel
Strand 8	B	542	545	parallel
Strand 9	B	487	490	parallel
Strand 10	B	519	522	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	375	378	parallel
Strand 3	B	251	254	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	191	first strand
Strand 2	B	223	229	anti-parallel
Strand 3	B	458	464	anti-parallel
Strand 4	B	428	430	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	218	first strand
Strand 2	B	196	204	anti-parallel
Strand 3	B	435	441	anti-parallel
Strand 4	B	447	453	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	335	first strand
Strand 2	B	340	341	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	366	first strand
Strand 2	B	372	373	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z16

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z16