Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z19

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z19 entry

There are 3 chains in PDB entry 5Z19 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	GLU 597
B	LEU 2	LEU 602
C	LEU 2	PHE 26

There are 85 helices in PDB entry 5Z19. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	42	Right-handed 310
Helix 2	AA2	A	61	66	Right-handed alpha
Helix 3	AA3	A	80	84	Right-handed 310
Helix 4	AA4	A	312	326	Right-handed alpha
Helix 5	AA5	A	339	350	Right-handed alpha
Helix 6	AA6	A	367	372	Right-handed alpha
Helix 7	AA7	A	379	383	Right-handed 310
Helix 8	AA8	A	385	405	Right-handed alpha
Helix 9	AA9	A	423	441	Right-handed alpha
Helix 10	AB1	A	462	466	Right-handed 310
Helix 11	AB2	A	481	483	Right-handed 310
Helix 12	AB3	A	484	502	Right-handed alpha
Helix 13	AB4	A	530	546	Right-handed alpha
Helix 14	AB5	A	588	597	Right-handed alpha
Helix 15	AB6	B	38	42	Right-handed 310
Helix 16	AB7	B	61	66	Right-handed alpha
Helix 17	AB8	B	80	84	Right-handed 310
Helix 18	AB9	B	312	326	Right-handed alpha
Helix 19	AC1	B	339	350	Right-handed alpha
Helix 20	AC2	B	367	372	Right-handed alpha
Helix 21	AC3	B	379	383	Right-handed 310
Helix 22	AC4	B	385	405	Right-handed alpha
Helix 23	AC5	B	423	441	Right-handed alpha
Helix 24	AC6	B	462	466	Right-handed 310
Helix 25	AC7	B	484	502	Right-handed alpha
Helix 26	AC8	B	530	546	Right-handed alpha
Helix 27	AC9	B	587	599	Right-handed alpha
Helix 28	AD1	C	38	42	Right-handed 310
Helix 29	AD2	C	61	66	Right-handed alpha
Helix 30	AD3	C	80	84	Right-handed 310
Helix 31	AD4	C	312	326	Right-handed alpha
Helix 32	AD5	C	339	350	Right-handed alpha
Helix 33	AD6	C	367	372	Right-handed alpha
Helix 34	AD7	C	379	383	Right-handed 310
Helix 35	AD8	C	385	405	Right-handed alpha
Helix 36	AD9	C	423	441	Right-handed alpha
Helix 37	AE1	C	462	466	Right-handed 310
Helix 38	AE2	C	481	483	Right-handed 310
Helix 39	AE3	C	484	502	Right-handed alpha
Helix 40	AE4	C	530	546	Right-handed alpha
Helix 41	AE5	C	587	599	Right-handed alpha
Helix 42	AE6	D	38	42	Right-handed 310
Helix 43	AE7	D	55	59	Right-handed 310
Helix 44	AE8	D	61	66	Right-handed alpha
Helix 45	AE9	D	80	84	Right-handed 310
Helix 46	AF1	D	312	326	Right-handed alpha
Helix 47	AF2	D	339	350	Right-handed alpha
Helix 48	AF3	D	367	372	Right-handed alpha
Helix 49	AF4	D	379	383	Right-handed 310
Helix 50	AF5	D	385	405	Right-handed alpha
Helix 51	AF6	D	423	441	Right-handed alpha
Helix 52	AF7	D	462	466	Right-handed 310
Helix 53	AF8	D	481	483	Right-handed 310
Helix 54	AF9	D	484	502	Right-handed alpha
Helix 55	AG1	D	530	546	Right-handed alpha
Helix 56	AG2	D	588	596	Right-handed alpha
Helix 57	AG3	E	38	42	Right-handed 310
Helix 58	AG4	E	55	59	Right-handed 310
Helix 59	AG5	E	61	66	Right-handed alpha
Helix 60	AG6	E	80	84	Right-handed 310
Helix 61	AG7	E	312	326	Right-handed alpha
Helix 62	AG8	E	339	350	Right-handed alpha
Helix 63	AG9	E	367	372	Right-handed alpha
Helix 64	AH1	E	379	383	Right-handed 310
Helix 65	AH2	E	385	405	Right-handed alpha
Helix 66	AH3	E	423	441	Right-handed alpha
Helix 67	AH4	E	462	466	Right-handed 310
Helix 68	AH5	E	481	483	Right-handed 310
Helix 69	AH6	E	484	502	Right-handed alpha
Helix 70	AH7	E	530	546	Right-handed alpha
Helix 71	AH8	E	588	598	Right-handed alpha
Helix 72	AH9	F	38	42	Right-handed 310
Helix 73	AI1	F	61	66	Right-handed alpha
Helix 74	AI2	F	80	84	Right-handed 310
Helix 75	AI3	F	312	326	Right-handed alpha
Helix 76	AI4	F	339	350	Right-handed alpha
Helix 77	AI5	F	367	372	Right-handed alpha
Helix 78	AI6	F	379	383	Right-handed 310
Helix 79	AI7	F	385	405	Right-handed alpha
Helix 80	AI8	F	423	441	Right-handed alpha
Helix 81	AI9	F	462	466	Right-handed 310
Helix 82	AJ1	F	481	483	Right-handed 310
Helix 83	AJ2	F	484	502	Right-handed alpha
Helix 84	AJ3	F	530	546	Right-handed alpha
Helix 85	AJ4	F	587	599	Right-handed alpha

There are 42 sheets in PDB entry 5Z19. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	178	183	anti-parallel
Strand 3	A	87	92	anti-parallel
Strand 4	A	118	121	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	51	first strand
Strand 2	A	22	29	anti-parallel
Strand 3	A	70	78	anti-parallel
Strand 4	A	131	139	anti-parallel
Strand 5	A	98	103	anti-parallel
Strand 6	A	106	112	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	154	first strand
Strand 2	A	160	164	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	198	first strand
Strand 2	A	201	210	anti-parallel
Strand 3	A	235	240	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	232	first strand
Strand 2	A	216	221	anti-parallel
Strand 3	A	254	260	anti-parallel
Strand 4	A	268	274	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	282	first strand
Strand 2	A	285	288	anti-parallel
Strand 3	A	291	292	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	299	first strand
Strand 2	A	330	332	parallel
Strand 3	A	352	356	parallel
Strand 4	A	410	417	parallel
Strand 5	A	447	451	parallel
Strand 6	A	469	472	parallel
Strand 7	A	508	512	parallel
Strand 8	A	551	556	parallel
Strand 9	A	295	299	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	178	183	anti-parallel
Strand 3	B	87	92	anti-parallel
Strand 4	B	118	121	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	22	29	anti-parallel
Strand 3	B	70	78	anti-parallel
Strand 4	B	131	139	anti-parallel
Strand 5	B	98	103	anti-parallel
Strand 6	B	106	112	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	154	first strand
Strand 2	B	160	164	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	198	first strand
Strand 2	B	201	210	anti-parallel
Strand 3	B	235	240	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	232	first strand
Strand 2	B	216	221	anti-parallel
Strand 3	B	254	261	anti-parallel
Strand 4	B	266	274	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	282	first strand
Strand 2	B	285	288	anti-parallel
Strand 3	B	291	292	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	299	first strand
Strand 2	B	330	332	parallel
Strand 3	B	352	356	parallel
Strand 4	B	410	417	parallel
Strand 5	B	447	451	parallel
Strand 6	B	469	472	parallel
Strand 7	B	508	512	parallel
Strand 8	B	551	556	parallel
Strand 9	B	295	299	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	19	first strand
Strand 2	C	178	183	anti-parallel
Strand 3	C	87	92	anti-parallel
Strand 4	C	118	121	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	22	28	anti-parallel
Strand 3	C	70	78	anti-parallel
Strand 4	C	131	139	anti-parallel
Strand 5	C	98	103	anti-parallel
Strand 6	C	106	112	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	154	first strand
Strand 2	C	160	164	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	198	first strand
Strand 2	C	201	210	anti-parallel
Strand 3	C	235	240	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	232	first strand
Strand 2	C	216	221	anti-parallel
Strand 3	C	254	261	anti-parallel
Strand 4	C	266	274	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	282	first strand
Strand 2	C	285	288	anti-parallel
Strand 3	C	291	292	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	299	first strand
Strand 2	C	330	332	parallel
Strand 3	C	352	356	parallel
Strand 4	C	410	417	parallel
Strand 5	C	447	451	parallel
Strand 6	C	469	472	parallel
Strand 7	C	508	512	parallel
Strand 8	C	551	556	parallel
Strand 9	C	295	299	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	19	first strand
Strand 2	D	178	183	anti-parallel
Strand 3	D	87	92	anti-parallel
Strand 4	D	118	121	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	51	first strand
Strand 2	D	22	29	anti-parallel
Strand 3	D	70	78	anti-parallel
Strand 4	D	131	139	anti-parallel
Strand 5	D	98	103	anti-parallel
Strand 6	D	106	112	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	154	first strand
Strand 2	D	160	164	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	198	first strand
Strand 2	D	201	210	anti-parallel
Strand 3	D	235	240	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	232	first strand
Strand 2	D	216	221	anti-parallel
Strand 3	D	254	261	anti-parallel
Strand 4	D	266	274	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	282	first strand
Strand 2	D	285	288	anti-parallel
Strand 3	D	291	292	anti-parallel

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There are 9 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	295	299	first strand
Strand 2	D	330	332	parallel
Strand 3	D	352	356	parallel
Strand 4	D	410	417	parallel
Strand 5	D	447	451	parallel
Strand 6	D	469	472	parallel
Strand 7	D	508	512	parallel
Strand 8	D	551	556	parallel
Strand 9	D	295	299	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	19	first strand
Strand 2	E	178	183	anti-parallel
Strand 3	E	87	92	anti-parallel
Strand 4	E	118	121	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	51	first strand
Strand 2	E	22	29	anti-parallel
Strand 3	E	70	78	anti-parallel
Strand 4	E	131	139	anti-parallel
Strand 5	E	98	103	anti-parallel
Strand 6	E	106	112	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	154	first strand
Strand 2	E	160	164	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	188	198	first strand
Strand 2	E	201	210	anti-parallel
Strand 3	E	235	240	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	227	232	first strand
Strand 2	E	216	221	anti-parallel
Strand 3	E	254	262	anti-parallel
Strand 4	E	265	274	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	279	282	first strand
Strand 2	E	285	288	anti-parallel
Strand 3	E	291	292	anti-parallel

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There are 9 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	295	299	first strand
Strand 2	E	330	332	parallel
Strand 3	E	352	356	parallel
Strand 4	E	410	417	parallel
Strand 5	E	447	451	parallel
Strand 6	E	469	472	parallel
Strand 7	E	508	512	parallel
Strand 8	E	551	556	parallel
Strand 9	E	295	299	parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	19	first strand
Strand 2	F	178	183	anti-parallel
Strand 3	F	87	92	anti-parallel
Strand 4	F	118	121	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	51	first strand
Strand 2	F	22	29	anti-parallel
Strand 3	F	70	78	anti-parallel
Strand 4	F	131	139	anti-parallel
Strand 5	F	98	103	anti-parallel
Strand 6	F	106	112	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	154	first strand
Strand 2	F	160	164	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	188	198	first strand
Strand 2	F	201	210	anti-parallel
Strand 3	F	235	240	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	227	232	first strand
Strand 2	F	216	221	anti-parallel
Strand 3	F	254	262	anti-parallel
Strand 4	F	265	274	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	279	282	first strand
Strand 2	F	285	288	anti-parallel
Strand 3	F	291	292	anti-parallel

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There are 9 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	295	299	first strand
Strand 2	F	330	332	parallel
Strand 3	F	352	356	parallel
Strand 4	F	410	417	parallel
Strand 5	F	447	451	parallel
Strand 6	F	469	472	parallel
Strand 7	F	508	512	parallel
Strand 8	F	551	556	parallel
Strand 9	F	295	299	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z19

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z19