Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z1W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z1W entry

There are 4 chains in PDB entry 5Z1W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 101	THR 563
B	LEU 101	THR 563
C	LEU 101	THR 563
D	LEU 101	THR 563

There are 56 helices in PDB entry 5Z1W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	101	120	Right-handed alpha
Helix 2	AA2	A	125	138	Right-handed alpha
Helix 3	AA3	A	153	162	Right-handed alpha
Helix 4	AA4	A	163	168	Right-handed alpha
Helix 5	AA5	A	277	291	Right-handed alpha
Helix 6	AA6	A	346	372	Right-handed alpha
Helix 7	AA7	A	386	421	Right-handed alpha
Helix 8	AA8	A	428	452	Right-handed alpha
Helix 9	AA9	A	453	457	Right-handed 310
Helix 10	AB1	A	480	480	Right-handed 310
Helix 11	AB2	A	481	499	Right-handed alpha
Helix 12	AB3	A	508	521	Right-handed alpha
Helix 13	AB4	A	525	533	Right-handed alpha
Helix 14	AB5	A	535	562	Right-handed alpha
Helix 15	AB6	B	102	120	Right-handed alpha
Helix 16	AB7	B	125	138	Right-handed alpha
Helix 17	AB8	B	153	162	Right-handed alpha
Helix 18	AB9	B	163	168	Right-handed alpha
Helix 19	AC1	B	277	291	Right-handed alpha
Helix 20	AC2	B	346	372	Right-handed alpha
Helix 21	AC3	B	386	421	Right-handed alpha
Helix 22	AC4	B	428	452	Right-handed alpha
Helix 23	AC5	B	453	457	Right-handed 310
Helix 24	AC6	B	480	480	Right-handed 310
Helix 25	AC7	B	481	499	Right-handed alpha
Helix 26	AC8	B	508	521	Right-handed alpha
Helix 27	AC9	B	525	533	Right-handed alpha
Helix 28	AD1	B	535	562	Right-handed alpha
Helix 29	AD2	C	102	120	Right-handed alpha
Helix 30	AD3	C	125	138	Right-handed alpha
Helix 31	AD4	C	153	162	Right-handed alpha
Helix 32	AD5	C	163	168	Right-handed alpha
Helix 33	AD6	C	277	291	Right-handed alpha
Helix 34	AD7	C	346	372	Right-handed alpha
Helix 35	AD8	C	386	421	Right-handed alpha
Helix 36	AD9	C	428	452	Right-handed alpha
Helix 37	AE1	C	453	457	Right-handed 310
Helix 38	AE2	C	480	480	Right-handed 310
Helix 39	AE3	C	481	499	Right-handed alpha
Helix 40	AE4	C	508	521	Right-handed alpha
Helix 41	AE5	C	525	533	Right-handed alpha
Helix 42	AE6	C	535	562	Right-handed alpha
Helix 43	AE7	D	102	120	Right-handed alpha
Helix 44	AE8	D	125	138	Right-handed alpha
Helix 45	AE9	D	153	162	Right-handed alpha
Helix 46	AF1	D	163	168	Right-handed alpha
Helix 47	AF2	D	277	291	Right-handed alpha
Helix 48	AF3	D	346	372	Right-handed alpha
Helix 49	AF4	D	386	421	Right-handed alpha
Helix 50	AF5	D	428	452	Right-handed alpha
Helix 51	AF6	D	453	457	Right-handed 310
Helix 52	AF7	D	480	480	Right-handed 310
Helix 53	AF8	D	481	499	Right-handed alpha
Helix 54	AF9	D	508	521	Right-handed alpha
Helix 55	AG1	D	525	533	Right-handed alpha
Helix 56	AG2	D	535	562	Right-handed alpha

There are 12 sheets in PDB entry 5Z1W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	192	204	anti-parallel
Strand 3	A	270	273	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	192	204	anti-parallel
Strand 3	A	298	309	anti-parallel
Strand 4	A	314	323	anti-parallel
Strand 5	A	331	339	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	264	265	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	192	204	anti-parallel
Strand 3	B	270	273	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	192	204	anti-parallel
Strand 3	B	298	309	anti-parallel
Strand 4	B	314	323	anti-parallel
Strand 5	B	331	339	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	259	first strand
Strand 2	B	264	265	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	192	204	anti-parallel
Strand 3	C	270	273	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	192	204	anti-parallel
Strand 3	C	298	309	anti-parallel
Strand 4	C	314	323	anti-parallel
Strand 5	C	331	339	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	259	first strand
Strand 2	C	264	265	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	192	204	anti-parallel
Strand 3	D	270	273	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	192	204	anti-parallel
Strand 3	D	298	309	anti-parallel
Strand 4	D	314	323	anti-parallel
Strand 5	D	331	339	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	259	first strand
Strand 2	D	264	265	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z1W

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z1W