Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z1Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z1Z entry

There are 4 chains in PDB entry 5Z1Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 329
B
 MET 1VAL 329
C
 MET 1VAL 329
D
 MET 1VAL 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 5Z1Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 21Right-handed alpha
Helix 2
AA2
A
38 43Right-handed 310
Helix 3
AA3
A
57 67Right-handed alpha
Helix 4
AA4
A
83 91Right-handed alpha
Helix 5
AA5
A
101 118Right-handed alpha
Helix 6
AA6
A
119 128Right-handed alpha
Helix 7
AA7
A
153 166Right-handed alpha
Helix 8
AA8
A
178 184Right-handed alpha
Helix 9
AA9
A
190 198Right-handed alpha
Helix 10
AB1
A
208 212Right-handed 310
Helix 11
AB2
A
216 223Right-handed alpha
Helix 12
AB3
A
234 238Right-handed 310
Helix 13
AB4
A
239 249Right-handed alpha
Helix 14
AB5
A
260 264Right-handed 310
Helix 15
AB6
A
280 288Right-handed alpha
Helix 16
AB7
A
300 320Right-handed alpha
Helix 17
AB8
B
9 21Right-handed alpha
Helix 18
AB9
B
38 43Right-handed 310
Helix 19
AC1
B
57 67Right-handed alpha
Helix 20
AC2
B
83 91Right-handed alpha
Helix 21
AC3
B
101 118Right-handed alpha
Helix 22
AC4
B
119 128Right-handed alpha
Helix 23
AC5
B
153 166Right-handed alpha
Helix 24
AC6
B
178 183Right-handed alpha
Helix 25
AC7
B
190 198Right-handed alpha
Helix 26
AC8
B
208 212Right-handed 310
Helix 27
AC9
B
216 223Right-handed alpha
Helix 28
AD1
B
234 238Right-handed 310
Helix 29
AD2
B
239 249Right-handed alpha
Helix 30
AD3
B
260 264Right-handed 310
Helix 31
AD4
B
282 288Right-handed alpha
Helix 32
AD5
B
300 320Right-handed alpha
Helix 33
AD6
C
9 21Right-handed alpha
Helix 34
AD7
C
38 43Right-handed 310
Helix 35
AD8
C
57 67Right-handed alpha
Helix 36
AD9
C
83 91Right-handed alpha
Helix 37
AE1
C
101 119Right-handed alpha
Helix 38
AE2
C
119 128Right-handed alpha
Helix 39
AE3
C
153 166Right-handed alpha
Helix 40
AE4
C
178 184Right-handed alpha
Helix 41
AE5
C
190 198Right-handed alpha
Helix 42
AE6
C
216 223Right-handed alpha
Helix 43
AE7
C
234 238Right-handed 310
Helix 44
AE8
C
239 249Right-handed alpha
Helix 45
AE9
C
280 288Right-handed alpha
Helix 46
AF1
C
300 320Right-handed alpha
Helix 47
AF2
D
9 21Right-handed alpha
Helix 48
AF3
D
38 43Right-handed 310
Helix 49
AF4
D
57 67Right-handed alpha
Helix 50
AF5
D
83 91Right-handed alpha
Helix 51
AF6
D
101 118Right-handed alpha
Helix 52
AF7
D
119 128Right-handed alpha
Helix 53
AF8
D
153 166Right-handed alpha
Helix 54
AF9
D
178 184Right-handed alpha
Helix 55
AG1
D
190 198Right-handed alpha
Helix 56
AG2
D
216 223Right-handed alpha
Helix 57
AG3
D
234 238Right-handed 310
Helix 58
AG4
D
239 249Right-handed alpha
Helix 59
AG5
D
300 320Right-handed alpha
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There are 8 sheets in PDB entry 5Z1Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
2 5parallel
Strand 3
A
47 50parallel
Strand 4
A
71 74parallel
Strand 5
A
93 95parallel
Strand 6
A
327 329anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
169 173parallel
Strand 3
A
146 150parallel
Strand 4
A
200 203parallel
Strand 5
A
227 231parallel
Strand 6
A
252 258parallel
Strand 7
A
290 293parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 29first strand
Strand 2
B
2 5parallel
Strand 3
B
47 50parallel
Strand 4
B
71 74parallel
Strand 5
B
93 95parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
169 173parallel
Strand 3
B
146 150parallel
Strand 4
B
200 203parallel
Strand 5
B
227 231parallel
Strand 6
B
252 258parallel
Strand 7
B
290 293parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 29first strand
Strand 2
C
2 5parallel
Strand 3
C
47 50parallel
Strand 4
C
71 74parallel
Strand 5
C
93 95parallel
Strand 6
C
327 329anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 188first strand
Strand 2
C
169 173parallel
Strand 3
C
146 150parallel
Strand 4
C
200 203parallel
Strand 5
C
227 231parallel
Strand 6
C
252 258parallel
Strand 7
C
290 293parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 29first strand
Strand 2
D
2 5parallel
Strand 3
D
47 50parallel
Strand 4
D
71 74parallel
Strand 5
D
93 95parallel
Strand 6
D
327 329anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
187 188first strand
Strand 2
D
169 173parallel
Strand 3
D
146 150parallel
Strand 4
D
200 203parallel
Strand 5
D
227 231parallel
Strand 6
D
252 258parallel
Strand 7
D
290 293parallel
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