Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z20

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z20 entry

There are 4 chains in PDB entry 5Z20 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	ALA 329
B	LYS -12	ALA 329
C	HIS 0	ALA 329
D	HIS 0	ALA 306

There are 89 helices in PDB entry 5Z20. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	19	Right-handed alpha
Helix 2	AA2	A	38	43	Right-handed 310
Helix 3	AA3	A	57	67	Right-handed alpha
Helix 4	AA4	A	83	90	Right-handed alpha
Helix 5	AA5	A	101	119	Right-handed alpha
Helix 6	AA6	A	119	129	Right-handed alpha
Helix 7	AA7	A	153	166	Right-handed alpha
Helix 8	AA8	A	178	184	Right-handed alpha
Helix 9	AA9	A	190	198	Right-handed alpha
Helix 10	AB1	A	216	223	Right-handed alpha
Helix 11	AB2	A	234	238	Right-handed 310
Helix 12	AB3	A	239	250	Right-handed alpha
Helix 13	AB4	A	278	286	Right-handed alpha
Helix 14	AB5	A	300	320	Right-handed alpha
Helix 15	AB6	B	9	20	Right-handed alpha
Helix 16	AB7	B	21	23	Right-handed 310
Helix 17	AB8	B	38	43	Right-handed 310
Helix 18	AB9	B	57	67	Right-handed alpha
Helix 19	AC1	B	83	90	Right-handed alpha
Helix 20	AC2	B	101	119	Right-handed alpha
Helix 21	AC3	B	119	129	Right-handed alpha
Helix 22	AC4	B	153	166	Right-handed alpha
Helix 23	AC5	B	178	184	Right-handed alpha
Helix 24	AC6	B	190	198	Right-handed alpha
Helix 25	AC7	B	216	223	Right-handed alpha
Helix 26	AC8	B	234	238	Right-handed 310
Helix 27	AC9	B	239	250	Right-handed alpha
Helix 28	AD1	B	278	287	Right-handed alpha
Helix 29	AD2	B	300	320	Right-handed alpha
Helix 30	AD3	C	9	20	Right-handed alpha
Helix 31	AD4	C	21	23	Right-handed 310
Helix 32	AD5	C	38	43	Right-handed 310
Helix 33	AD6	C	57	67	Right-handed alpha
Helix 34	AD7	C	83	90	Right-handed alpha
Helix 35	AD8	C	101	119	Right-handed alpha
Helix 36	AD9	C	119	129	Right-handed alpha
Helix 37	AE1	C	153	165	Right-handed alpha
Helix 38	AE2	C	178	184	Right-handed alpha
Helix 39	AE3	C	190	198	Right-handed alpha
Helix 40	AE4	C	216	222	Right-handed alpha
Helix 41	AE5	C	234	238	Right-handed 310
Helix 42	AE6	C	239	250	Right-handed alpha
Helix 43	AE7	C	278	286	Right-handed alpha
Helix 44	AE8	C	300	320	Right-handed alpha
Helix 45	AE9	D	9	20	Right-handed alpha
Helix 46	AF1	D	21	23	Right-handed 310
Helix 47	AF2	D	38	43	Right-handed 310
Helix 48	AF3	D	57	67	Right-handed alpha
Helix 49	AF4	D	83	90	Right-handed alpha
Helix 50	AF5	D	101	119	Right-handed alpha
Helix 51	AF6	D	119	129	Right-handed alpha
Helix 52	AF7	D	153	166	Right-handed alpha
Helix 53	AF8	D	178	184	Right-handed alpha
Helix 54	AF9	D	190	198	Right-handed alpha
Helix 55	AG1	D	216	223	Right-handed alpha
Helix 56	AG2	D	234	238	Right-handed 310
Helix 57	AG3	D	239	250	Right-handed alpha
Helix 58	AG4	D	278	286	Right-handed alpha
Helix 59	AG5	D	300	320	Right-handed alpha
Helix 60	AG6	E	9	20	Right-handed alpha
Helix 61	AG7	E	21	23	Right-handed 310
Helix 62	AG8	E	38	43	Right-handed 310
Helix 63	AG9	E	57	67	Right-handed alpha
Helix 64	AH1	E	83	90	Right-handed alpha
Helix 65	AH2	E	101	119	Right-handed alpha
Helix 66	AH3	E	119	129	Right-handed alpha
Helix 67	AH4	E	153	165	Right-handed alpha
Helix 68	AH5	E	178	184	Right-handed alpha
Helix 69	AH6	E	190	198	Right-handed alpha
Helix 70	AH7	E	216	223	Right-handed alpha
Helix 71	AH8	E	234	238	Right-handed 310
Helix 72	AH9	E	239	250	Right-handed alpha
Helix 73	AI1	E	278	286	Right-handed alpha
Helix 74	AI2	E	300	320	Right-handed alpha
Helix 75	AI3	F	9	20	Right-handed alpha
Helix 76	AI4	F	21	23	Right-handed 310
Helix 77	AI5	F	38	43	Right-handed 310
Helix 78	AI6	F	57	67	Right-handed alpha
Helix 79	AI7	F	83	90	Right-handed alpha
Helix 80	AI8	F	101	119	Right-handed alpha
Helix 81	AI9	F	119	129	Right-handed alpha
Helix 82	AJ1	F	153	166	Right-handed alpha
Helix 83	AJ2	F	178	184	Right-handed alpha
Helix 84	AJ3	F	190	198	Right-handed alpha
Helix 85	AJ4	F	216	223	Right-handed alpha
Helix 86	AJ5	F	234	238	Right-handed 310
Helix 87	AJ6	F	239	250	Right-handed alpha
Helix 88	AJ7	F	278	286	Right-handed alpha
Helix 89	AJ8	F	300	320	Right-handed alpha

There are 12 sheets in PDB entry 5Z20. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	A	2	5	parallel
Strand 3	A	47	50	parallel
Strand 4	A	71	74	parallel
Strand 5	A	94	95	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	169	173	parallel
Strand 3	A	146	150	parallel
Strand 4	A	200	203	parallel
Strand 5	A	227	231	parallel
Strand 6	A	252	257	parallel
Strand 7	A	290	292	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	2	5	parallel
Strand 3	B	47	50	parallel
Strand 4	B	71	74	parallel
Strand 5	B	94	95	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	169	173	parallel
Strand 3	B	146	150	parallel
Strand 4	B	200	203	parallel
Strand 5	B	227	231	parallel
Strand 6	B	252	257	parallel
Strand 7	B	290	292	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	2	5	parallel
Strand 3	C	47	50	parallel
Strand 4	C	71	74	parallel
Strand 5	C	94	95	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	169	173	parallel
Strand 3	C	146	150	parallel
Strand 4	C	200	203	parallel
Strand 5	C	228	231	parallel
Strand 6	C	254	257	parallel
Strand 7	C	290	292	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	29	first strand
Strand 2	D	2	5	parallel
Strand 3	D	47	50	parallel
Strand 4	D	71	74	parallel
Strand 5	D	94	95	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	169	173	parallel
Strand 3	D	146	150	parallel
Strand 4	D	200	203	parallel
Strand 5	D	228	231	parallel
Strand 6	D	254	257	parallel
Strand 7	D	290	292	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	29	first strand
Strand 2	E	2	5	parallel
Strand 3	E	47	50	parallel
Strand 4	E	71	74	parallel
Strand 5	E	94	95	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	188	first strand
Strand 2	E	169	173	parallel
Strand 3	E	146	150	parallel
Strand 4	E	200	203	parallel
Strand 5	E	228	231	parallel
Strand 6	E	254	257	parallel
Strand 7	E	290	292	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	2	5	parallel
Strand 3	F	47	50	parallel
Strand 4	F	71	74	parallel
Strand 5	F	94	95	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	187	188	first strand
Strand 2	F	169	173	parallel
Strand 3	F	146	150	parallel
Strand 4	F	200	203	parallel
Strand 5	F	228	231	parallel
Strand 6	F	254	257	parallel
Strand 7	F	290	292	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z20

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z20