Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z2Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z2Q entry

There are 4 chains in PDB entry 5Z2Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 PRO 19LYS 53
D
 PRO 19ARG 54
A
 ASN 205LYS 426
B
 ASP 203LYS 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 5Z2Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
36 50Right-handed alpha
Helix 2
AA2
D
36 50Right-handed alpha
Helix 3
AA3
A
261 267Right-handed 310
Helix 4
AA4
A
273 281Right-handed alpha
Helix 5
AA5
A
282 284Right-handed 310
Helix 6
AA6
A
360 372Right-handed alpha
Helix 7
AA7
A
375 385Right-handed alpha
Helix 8
AA8
B
204 209Right-handed alpha
Helix 9
AA9
B
261 267Right-handed 310
Helix 10
AB1
B
273 281Right-handed alpha
Helix 11
AB2
B
282 284Right-handed 310
Helix 12
AB3
B
360 372Right-handed alpha
Helix 13
AB4
B
375 385Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5Z2Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 24first strand
Strand 2
C
27 31anti-parallel
Strand 3
B
332 342anti-parallel
Strand 4
B
320 329anti-parallel
Strand 5
B
386 394anti-parallel
Strand 6
B
400 410anti-parallel
Strand 7
B
286 293parallel
Strand 8
B
418 425anti-parallel
Strand 9
B
257 259parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 24first strand
Strand 2
D
27 31anti-parallel
Strand 3
A
332 342anti-parallel
Strand 4
A
320 329anti-parallel
Strand 5
A
386 394anti-parallel
Strand 6
A
400 410anti-parallel
Strand 7
A
286 293parallel
Strand 8
A
418 425anti-parallel
Strand 9
A
256 259parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 244first strand
Strand 2
A
218 227anti-parallel
Strand 3
A
306 315anti-parallel
Strand 4
A
349 358anti-parallel
Strand 5
A
344 346anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 244first strand
Strand 2
B
218 227anti-parallel
Strand 3
B
306 315anti-parallel
Strand 4
B
349 358anti-parallel
Strand 5
B
344 346anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il