Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z38

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z38 entry

There are 12 chains in PDB entry 5Z38 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 154
B	MET 1	ALA 154
C	MET 1	GLY 155
D	LEU 7	ARG 156
E	PRO -3	PRO 37
F	GLY -2	LYS 55
G	PRO -3	PRO 37
H	SER 0	LYS 55
I	GLY -4	LYS 38
J	MET 1	LYS 55
K	PRO -3	PRO 37
L	LEU 2	LYS 55

There are 20 helices in PDB entry 5Z38. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	17	Right-handed alpha
Helix 2	AA2	A	62	79	Right-handed alpha
Helix 3	AA3	A	105	130	Right-handed alpha
Helix 4	AA4	A	147	152	Right-handed 310
Helix 5	AA5	B	3	17	Right-handed alpha
Helix 6	AA6	B	62	79	Right-handed alpha
Helix 7	AA7	B	105	129	Right-handed alpha
Helix 8	AA8	B	149	153	Right-handed 310
Helix 9	AA9	C	3	17	Right-handed alpha
Helix 10	AB1	C	63	79	Right-handed alpha
Helix 11	AB2	C	105	131	Right-handed alpha
Helix 12	AB3	C	147	152	Right-handed 310
Helix 13	AB4	D	8	17	Right-handed alpha
Helix 14	AB5	D	62	79	Right-handed alpha
Helix 15	AB6	D	105	130	Right-handed alpha
Helix 16	AB7	D	149	153	Right-handed 310
Helix 17	AB8	F	45	54	Right-handed alpha
Helix 18	AB9	H	45	54	Right-handed alpha
Helix 19	AC1	J	45	54	Right-handed alpha
Helix 20	AC2	L	45	54	Right-handed alpha

There are 12 sheets in PDB entry 5Z38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	33	first strand
Strand 2	A	37	42	anti-parallel
Strand 3	A	48	57	anti-parallel
Strand 4	A	92	100	anti-parallel
Strand 5	A	83	87	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	33	first strand
Strand 2	B	37	42	anti-parallel
Strand 3	B	48	57	anti-parallel
Strand 4	B	92	100	anti-parallel
Strand 5	B	83	87	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	33	first strand
Strand 2	C	37	42	anti-parallel
Strand 3	C	48	57	anti-parallel
Strand 4	C	92	100	anti-parallel
Strand 5	C	83	87	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	32	first strand
Strand 2	D	38	43	anti-parallel
Strand 3	D	48	57	anti-parallel
Strand 4	D	92	100	anti-parallel
Strand 5	D	83	87	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	7	first strand
Strand 2	F	29	35	anti-parallel
Strand 3	F	18	26	anti-parallel
Strand 4	F	11	14	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	7	first strand
Strand 2	E	29	35	anti-parallel
Strand 3	E	18	26	anti-parallel
Strand 4	E	11	14	anti-parallel
Strand 5	F	42	44	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	7	first strand
Strand 2	H	29	35	anti-parallel
Strand 3	H	18	26	anti-parallel
Strand 4	H	11	14	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1	7	first strand
Strand 2	G	29	35	anti-parallel
Strand 3	G	18	26	anti-parallel
Strand 4	G	11	14	anti-parallel
Strand 5	H	42	44	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	7	first strand
Strand 2	J	29	35	anti-parallel
Strand 3	J	18	26	anti-parallel
Strand 4	J	11	14	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2	7	first strand
Strand 2	I	29	35	anti-parallel
Strand 3	I	18	26	anti-parallel
Strand 4	I	11	14	anti-parallel
Strand 5	J	42	44	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	2	7	first strand
Strand 2	L	29	35	anti-parallel
Strand 3	L	18	26	anti-parallel
Strand 4	L	11	14	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	7	first strand
Strand 2	K	29	35	anti-parallel
Strand 3	K	18	25	anti-parallel
Strand 4	K	11	14	anti-parallel
Strand 5	L	42	44	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z38

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z38