Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z3I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z3I entry

There is 1 chain in PDB entry 5Z3I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3PRO 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5Z3I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 29Right-handed alpha
Helix 2
AA2
A
41 45Right-handed 310
Helix 3
AA3
A
46 49Right-handed 310
Helix 4
AA4
A
93 98Right-handed alpha
Helix 5
AA5
A
112 121Right-handed alpha
Helix 6
AA6
A
123 127Right-handed 310
Helix 7
AA7
A
130 144Right-handed alpha
Helix 8
AA8
A
147 168Right-handed alpha
Helix 9
AA9
A
168 182Right-handed alpha
Helix 10
AB1
A
188 197Right-handed alpha
Helix 11
AB2
A
197 208Right-handed alpha
Helix 12
AB3
A
234 240Right-handed 310
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There are 3 sheets in PDB entry 5Z3I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
51 57parallel
Strand 3
A
63 69anti-parallel
Strand 4
A
75 80anti-parallel
Strand 5
A
83 86anti-parallel
Strand 6
A
103 106parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
36 38anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 220first strand
Strand 2
A
226 231anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il