Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z3K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z3K entry

There are 2 chains in PDB entry 5Z3K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4SER 484
B
 THR 2SER 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5Z3K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 49Right-handed alpha
Helix 2
AA2
A
82 86Right-handed 310
Helix 3
AA3
A
88 101Right-handed alpha
Helix 4
AA4
A
122 139Right-handed alpha
Helix 5
AA5
A
168 187Right-handed alpha
Helix 6
AA6
A
207 217Right-handed alpha
Helix 7
AA7
A
237 253Right-handed alpha
Helix 8
AA8
A
276 292Right-handed alpha
Helix 9
AA9
A
328 342Right-handed alpha
Helix 10
AB1
A
380 385Right-handed 310
Helix 11
AB2
B
42 49Right-handed alpha
Helix 12
AB3
B
82 86Right-handed 310
Helix 13
AB4
B
88 101Right-handed alpha
Helix 14
AB5
B
122 139Right-handed alpha
Helix 15
AB6
B
168 187Right-handed alpha
Helix 16
AB7
B
207 218Right-handed alpha
Helix 17
AB8
B
237 253Right-handed alpha
Helix 18
AB9
B
276 293Right-handed alpha
Helix 19
AC1
B
328 342Right-handed alpha
Helix 20
AC2
B
380 385Right-handed 310
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There are 9 sheets in PDB entry 5Z3K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
345 350anti-parallel
Strand 3
A
357 363anti-parallel
Strand 4
A
369 376anti-parallel
Strand 5
A
474 482anti-parallel
Strand 6
A
438 446anti-parallel
Strand 7
A
449 459anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
345 350anti-parallel
Strand 3
A
6 12anti-parallel
Strand 4
A
423 429parallel
Strand 5
A
464 469anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
53 55parallel
Strand 3
A
104 109parallel
Strand 4
A
151 154parallel
Strand 5
A
191 197parallel
Strand 6
A
223 229parallel
Strand 7
A
259 266parallel
Strand 8
A
298 301parallel
Strand 9
A
25 27parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
314 315anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 394first strand
Strand 2
A
405 408anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
449 459first strand
Strand 2
B
438 446anti-parallel
Strand 3
B
474 482anti-parallel
Strand 4
B
369 376anti-parallel
Strand 5
B
357 363anti-parallel
Strand 6
B
345 350anti-parallel
Strand 7
B
6 19anti-parallel
Strand 8
B
423 429parallel
Strand 9
B
464 469anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 27first strand
Strand 2
B
53 55parallel
Strand 3
B
104 109parallel
Strand 4
B
151 154parallel
Strand 5
B
191 197parallel
Strand 6
B
223 229parallel
Strand 7
B
259 266parallel
Strand 8
B
298 301parallel
Strand 9
B
25 27parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 309first strand
Strand 2
B
314 315anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 398first strand
Strand 2
B
401 408anti-parallel
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