Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z3O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z3O entry

There are 11 chains in PDB entry 5Z3O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 37	ARG 134
B	ALA 15	GLY 101
C	ALA 12	LYS 118
D	THR 29	ALA 121
E	ARG 40	ARG 134
F	ARG 17	GLY 102
G	ALA 12	LYS 118
H	THR 29	ALA 121
I	T 2	A 147
J	T 1	A 146
O	LEU 670	GLY 1348

There are 65 helices in PDB entry 5Z3O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	63	79	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	131	Right-handed alpha
Helix 5	AA5	B	24	29	Right-handed 310
Helix 6	AA6	B	30	41	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	94	Right-handed alpha
Helix 9	AA9	C	16	21	Right-handed alpha
Helix 10	AB1	C	26	37	Right-handed alpha
Helix 11	AB2	C	46	73	Right-handed alpha
Helix 12	AB3	C	79	90	Right-handed alpha
Helix 13	AB4	C	90	98	Right-handed alpha
Helix 14	AB5	D	35	46	Right-handed alpha
Helix 15	AB6	D	52	81	Right-handed alpha
Helix 16	AB7	D	87	99	Right-handed alpha
Helix 17	AB8	D	102	120	Right-handed alpha
Helix 18	AB9	E	44	57	Right-handed alpha
Helix 19	AC1	E	63	79	Right-handed alpha
Helix 20	AC2	E	85	114	Right-handed alpha
Helix 21	AC3	E	120	131	Right-handed alpha
Helix 22	AC4	F	30	41	Right-handed alpha
Helix 23	AC5	F	49	76	Right-handed alpha
Helix 24	AC6	F	82	94	Right-handed alpha
Helix 25	AC7	G	16	21	Right-handed alpha
Helix 26	AC8	G	26	37	Right-handed alpha
Helix 27	AC9	G	46	73	Right-handed alpha
Helix 28	AD1	G	79	90	Right-handed alpha
Helix 29	AD2	G	90	98	Right-handed alpha
Helix 30	AD3	H	35	46	Right-handed alpha
Helix 31	AD4	H	52	81	Right-handed alpha
Helix 32	AD5	H	87	99	Right-handed alpha
Helix 33	AD6	H	102	120	Right-handed alpha
Helix 34	AD7	O	671	683	Right-handed alpha
Helix 35	AD8	O	683	690	Right-handed alpha
Helix 36	AD9	O	745	750	Right-handed alpha
Helix 37	AE1	O	768	784	Right-handed alpha
Helix 38	AE2	O	797	812	Right-handed alpha
Helix 39	AE3	O	824	838	Right-handed alpha
Helix 40	AE4	O	849	863	Right-handed alpha
Helix 41	AE5	O	873	879	Right-handed alpha
Helix 42	AE6	O	879	886	Right-handed alpha
Helix 43	AE7	O	895	900	Right-handed alpha
Helix 44	AE8	O	904	912	Right-handed alpha
Helix 45	AE9	O	942	958	Right-handed alpha
Helix 46	AF1	O	968	973	Right-handed alpha
Helix 47	AF2	O	976	987	Right-handed alpha
Helix 48	AF3	O	995	999	Right-handed 310
Helix 49	AF4	O	1020	1031	Right-handed alpha
Helix 50	AF5	O	1049	1059	Right-handed alpha
Helix 51	AF6	O	1068	1073	Right-handed alpha
Helix 52	AF7	O	1082	1085	Right-handed 310
Helix 53	AF8	O	1086	1103	Right-handed alpha
Helix 54	AF9	O	1113	1126	Right-handed alpha
Helix 55	AG1	O	1139	1150	Right-handed alpha
Helix 56	AG2	O	1187	1199	Right-handed alpha
Helix 57	AG3	O	1216	1226	Right-handed alpha
Helix 58	AG4	O	1227	1231	Right-handed 310
Helix 59	AG5	O	1232	1241	Right-handed alpha
Helix 60	AG6	O	1246	1250	Right-handed 310
Helix 61	AG7	O	1251	1263	Right-handed alpha
Helix 62	AG8	O	1264	1268	Right-handed 310
Helix 63	AG9	O	1279	1286	Right-handed alpha
Helix 64	AH1	O	1290	1307	Right-handed alpha
Helix 65	AH2	O	1337	1341	Right-handed alpha

There are 8 sheets in PDB entry 5Z3O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	788	790	first strand
Strand 2	O	918	922	parallel
Strand 3	O	890	893	parallel
Strand 4	O	819	822	parallel
Strand 5	O	868	869	parallel
Strand 6	O	844	845	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	1130	1131	first strand
Strand 2	O	1158	1162	parallel
Strand 3	O	1106	1110	parallel
Strand 4	O	1177	1180	parallel
Strand 5	O	1207	1210	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z3O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z3O