Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z3Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z3Q entry

There are 6 chains in PDB entry 5Z3Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 117	GLN 329
A	LYS 117	GLN 329
D	LYS 117	PHE 328
C	HIS 118	GLU 325
E	SER 116	GLN 329
H	ARG 119	LEU 327

There are 29 helices in PDB entry 5Z3Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	134	150	Right-handed alpha
Helix 2	AA2	B	184	194	Right-handed alpha
Helix 3	AA3	B	205	209	Right-handed 310
Helix 4	AA4	B	238	242	Right-handed 310
Helix 5	AA5	B	261	266	Right-handed alpha
Helix 6	AA6	B	302	328	Right-handed alpha
Helix 7	AA7	A	134	150	Right-handed alpha
Helix 8	AA8	A	184	194	Right-handed alpha
Helix 9	AA9	A	261	266	Right-handed alpha
Helix 10	AB1	A	302	329	Right-handed alpha
Helix 11	AB2	D	130	133	Right-handed 310
Helix 12	AB3	D	134	150	Right-handed alpha
Helix 13	AB4	D	185	194	Right-handed alpha
Helix 14	AB5	D	205	209	Right-handed 310
Helix 15	AB6	D	236	240	Right-handed alpha
Helix 16	AB7	D	252	255	Right-handed 310
Helix 17	AB8	D	261	266	Right-handed alpha
Helix 18	AB9	D	302	327	Right-handed alpha
Helix 19	AC1	C	134	150	Right-handed alpha
Helix 20	AC2	C	185	194	Right-handed alpha
Helix 21	AC3	C	261	266	Right-handed alpha
Helix 22	AC4	C	302	325	Right-handed alpha
Helix 23	AC5	E	134	150	Right-handed alpha
Helix 24	AC6	E	185	194	Right-handed alpha
Helix 25	AC7	E	238	242	Right-handed 310
Helix 26	AC8	E	261	267	Right-handed alpha
Helix 27	AC9	E	302	328	Right-handed alpha
Helix 28	AD1	H	135	150	Right-handed alpha
Helix 29	AD2	H	303	327	Right-handed alpha

There are 10 sheets in PDB entry 5Z3Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	157	first strand
Strand 2	B	172	178	parallel
Strand 3	B	217	222	parallel
Strand 4	B	123	128	parallel
Strand 5	B	244	250	parallel
Strand 6	B	290	294	anti-parallel
Strand 7	B	300	301	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	256	first strand
Strand 2	B	259	260	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	157	first strand
Strand 2	A	172	175	parallel
Strand 3	A	217	222	parallel
Strand 4	A	123	128	parallel
Strand 5	A	244	250	parallel
Strand 6	A	290	294	anti-parallel
Strand 7	A	300	301	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	259	260	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	157	first strand
Strand 2	D	172	175	parallel
Strand 3	D	217	222	parallel
Strand 4	D	123	128	parallel
Strand 5	D	244	250	parallel
Strand 6	D	290	294	anti-parallel
Strand 7	D	300	301	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	157	first strand
Strand 2	C	172	175	parallel
Strand 3	C	217	222	parallel
Strand 4	C	123	128	parallel
Strand 5	C	244	250	parallel
Strand 6	C	290	294	anti-parallel
Strand 7	C	300	301	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	256	first strand
Strand 2	C	259	260	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	156	first strand
Strand 2	E	172	175	parallel
Strand 3	E	217	222	parallel
Strand 4	E	123	128	parallel
Strand 5	E	244	250	parallel
Strand 6	E	290	294	anti-parallel
Strand 7	E	300	301	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	255	256	first strand
Strand 2	E	259	260	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	125	first strand
Strand 2	H	217	219	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z3Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z3Q