Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z47 entry

There are 4 chains in PDB entry 5Z47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1VAL 143
A
 ASN 145SER 210
B
 SER 0VAL 143
B
 ASN 145SER 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 5Z47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 28Right-handed alpha
Helix 2
AA2
A
33 35Right-handed 310
Helix 3
AA3
A
46 62Right-handed alpha
Helix 4
AA4
A
118 129Right-handed alpha
Helix 5
AA5
A
142 158Right-handed alpha
Helix 6
AA6
A
173 179Right-handed alpha
Helix 7
AA7
A
191 210Right-handed alpha
Helix 8
AA8
B
18 28Right-handed alpha
Helix 9
AA9
B
32 36Right-handed 310
Helix 10
AB1
B
46 62Right-handed alpha
Helix 11
AB2
B
118 129Right-handed alpha
Helix 12
AB3
B
142 158Right-handed alpha
Helix 13
AB4
B
173 179Right-handed alpha
Helix 14
AB5
B
191 210Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5Z47. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
3 9parallel
Strand 4
A
65 71parallel
Strand 5
A
165 170parallel
Strand 6
A
78 81anti-parallel
Strand 7
A
133 136parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
112 114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
103 104anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 43first strand
Strand 2
B
3 9parallel
Strand 3
B
65 71parallel
Strand 4
B
165 170parallel
Strand 5
B
78 81anti-parallel
Strand 6
B
133 136parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 85first strand
Strand 2
B
112 114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 88first strand
Strand 2
B
103 104anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il