Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z49


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z49 entry

There are 2 chains in PDB entry 5Z49 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 HIS 88SER 307
A
 HIS 88SER 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5Z49. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
103 107Right-handed 310
Helix 2
AA2
B
108 119Right-handed alpha
Helix 3
AA3
B
130 141Right-handed alpha
Helix 4
AA4
B
175 180Right-handed 310
Helix 5
AA5
B
184 190Right-handed alpha
Helix 6
AA6
B
200 213Right-handed alpha
Helix 7
AA7
B
225 235Right-handed alpha
Helix 8
AA8
B
245 248Right-handed 310
Helix 9
AA9
B
281 302Right-handed alpha
Helix 10
AB1
A
103 106Right-handed 310
Helix 11
AB2
A
107 119Right-handed alpha
Helix 12
AB3
A
130 141Right-handed alpha
Helix 13
AB4
A
184 189Right-handed alpha
Helix 14
AB5
A
200 213Right-handed alpha
Helix 15
AB6
A
225 235Right-handed alpha
Helix 16
AB7
A
245 247Right-handed 310
Helix 17
AB8
A
281 302Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5Z49. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 164first strand
Strand 2
B
269 275anti-parallel
Strand 3
B
145 148anti-parallel
Strand 4
B
94 101parallel
Strand 5
B
122 129parallel
Strand 6
A
219 223parallel
Strand 7
A
193 195parallel
Strand 8
A
239 243parallel
Strand 9
A
167 172anti-parallel
Strand 10
A
256 258anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 243first strand
Strand 2
B
167 172anti-parallel
Strand 3
B
256 259anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 195first strand
Strand 2
B
219 222parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 129first strand
Strand 2
A
94 101parallel
Strand 3
A
145 148parallel
Strand 4
A
269 275anti-parallel
Strand 5
A
157 164anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il