Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z5C entry

There are121 chains in PDB entry 5Z5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 6MET 6
A
 TYR 8GLY 14
A
 THR 16TYR 25
A
 GLY 27VAL 34
A
 ASN 36LEU 54
A
 ALA 57GLU 59
A
 ASN 61ILE 63
A
 GLY 66ARG 104
A
 SER 106ALA 113
A
 ILE 115ARG 120
A
 GLU 122GLU 130
A
 THR 132THR 132
A
 GLU 134ALA 136
A
 ASN 138MET 169
A
 SER 171GLY 193
A
 ARG 195ILE 196
A
 GLU 198ALA 203
A
 ILE 205TYR 220
A
 VAL 222ALA 223
A
 HIS 225VAL 239
A
 LEU 241ASP 242
A
 LEU 244GLN 260
A
 LEU 262ALA 263
A
 CYS 265ASN 285
A
 LEU 287GLY 288
A
 ASP 290ASN 301
A
 TYR 304GLU 313
A
 VAL 315VAL 315
A
 GLU 317SER 321
A
 ASP 323LEU 326
A
 GLU 328ILE 329
A
 ASN 331VAL 335
B
 GLY 0GLN 3
B
 MET 6MET 6
B
 TYR 8GLY 14
B
 THR 16TYR 25
B
 GLY 27VAL 34
B
 ASN 36LEU 54
B
 ALA 57GLU 59
B
 ASN 61ILE 63
B
 GLY 66ARG 104
B
 SER 106ALA 113
B
 ILE 115ARG 120
B
 GLU 122GLU 130
B
 THR 132THR 132
B
 GLU 134ALA 136
B
 ASN 138MET 169
B
 SER 171GLY 193
B
 ARG 195ILE 196
B
 GLU 198ALA 203
B
 ILE 205TYR 220
B
 VAL 222ALA 223
B
 HIS 225VAL 239
B
 LEU 241ASP 242
B
 LEU 244GLN 260
B
 LEU 262ALA 263
B
 CYS 265ASN 285
B
 LEU 287GLY 288
B
 ASP 290ASN 301
B
 TYR 304GLU 313
B
 VAL 315VAL 315
B
 GLU 317SER 321
B
 ASP 323LEU 326
B
 GLU 328ILE 329
B
 ASN 331VAL 335
C
 MET 6MET 6
C
 TYR 8GLY 14
C
 THR 16TYR 25
C
 GLY 27VAL 34
C
 ASN 36LEU 54
C
 ALA 57GLU 59
C
 ASN 61ILE 63
C
 GLY 66ARG 104
C
 SER 106ALA 113
C
 ILE 115ARG 120
C
 GLU 122GLU 130
C
 THR 132THR 132
C
 GLU 134ALA 136
C
 ASN 138MET 169
C
 SER 171GLY 193
C
 ARG 195ILE 196
C
 GLU 198ALA 203
C
 ILE 205TYR 220
C
 VAL 222ALA 223
C
 HIS 225VAL 239
C
 LEU 241ASP 242
C
 LEU 244GLN 260
C
 LEU 262ALA 263
C
 CYS 265ASN 285
C
 LEU 287GLY 288
C
 ASP 290ASN 301
C
 TYR 304GLU 313
C
 VAL 315VAL 315
C
 GLU 317SER 321
C
 ASP 323LEU 326
C
 GLU 328ILE 329
C
 ASN 331VAL 335
D
 MET 6MET 6
D
 TYR 8GLY 14
D
 THR 16TYR 25
D
 GLY 27VAL 34
D
 ASN 36LEU 54
D
 ALA 57GLU 59
D
 ASN 61ILE 63
D
 GLY 66ARG 104
D
 SER 106ALA 113
D
 ILE 115ARG 120
D
 GLU 122GLU 130
D
 THR 132THR 132
D
 GLU 134ALA 136
D
 ASN 138MET 169
D
 SER 171GLY 193
D
 ARG 195ILE 196
D
 GLU 198ALA 203
D
 ILE 205TYR 220
D
 VAL 222ALA 223
D
 HIS 225VAL 239
D
 LEU 241ASP 242
D
 LEU 244GLN 260
D
 LEU 262ALA 263
D
 CYS 265ASN 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 5Z5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed 310
Helix 2
AA2
A
45 60Right-handed alpha
Helix 3
AA3
A
75 88Right-handed alpha
Helix 4
AA4
A
101 111Right-handed alpha
Helix 5
AA5
A
123 139Right-handed alpha
Helix 6
AA6
A
150 160Right-handed alpha
Helix 7
AA7
A
160 172Right-handed alpha
Helix 8
AA8
A
186 200Right-handed alpha
Helix 9
AA9
A
214 219Right-handed alpha
Helix 10
AB1
A
240 244Right-handed 310
Helix 11
AB2
A
251 265Right-handed alpha
Helix 12
AB3
A
270 288Right-handed alpha
Helix 13
AB4
A
301 305Right-handed 310
Helix 14
AB5
A
307 311Right-handed 310
Helix 15
AB6
A
320 322Right-handed 310
Helix 16
AB7
B
1 10Right-handed alpha
Helix 17
AB8
B
11 13Right-handed 310
Helix 18
AB9
B
45 60Right-handed alpha
Helix 19
AC1
B
75 88Right-handed alpha
Helix 20
AC2
B
101 111Right-handed alpha
Helix 21
AC3
B
125 139Right-handed alpha
Helix 22
AC4
B
150 160Right-handed alpha
Helix 23
AC5
B
160 172Right-handed alpha
Helix 24
AC6
B
186 200Right-handed alpha
Helix 25
AC7
B
214 219Right-handed alpha
Helix 26
AC8
B
240 244Right-handed 310
Helix 27
AC9
B
251 265Right-handed alpha
Helix 28
AD1
B
270 288Right-handed alpha
Helix 29
AD2
B
301 305Right-handed 310
Helix 30
AD3
B
307 311Right-handed 310
Helix 31
AD4
B
320 322Right-handed 310
Helix 32
AD5
C
5 10Right-handed alpha
Helix 33
AD6
C
11 13Right-handed 310
Helix 34
AD7
C
45 60Right-handed alpha
Helix 35
AD8
C
75 88Right-handed alpha
Helix 36
AD9
C
101 111Right-handed alpha
Helix 37
AE1
C
123 139Right-handed alpha
Helix 38
AE2
C
150 160Right-handed alpha
Helix 39
AE3
C
160 172Right-handed alpha
Helix 40
AE4
C
186 200Right-handed alpha
Helix 41
AE5
C
214 219Right-handed alpha
Helix 42
AE6
C
251 265Right-handed alpha
Helix 43
AE7
C
270 288Right-handed alpha
Helix 44
AE8
C
301 305Right-handed 310
Helix 45
AE9
C
307 311Right-handed 310
Helix 46
AF1
C
320 322Right-handed 310
Helix 47
AF2
D
5 10Right-handed alpha
Helix 48
AF3
D
11 13Right-handed 310
Helix 49
AF4
D
45 60Right-handed alpha
Helix 50
AF5
D
75 88Right-handed alpha
Helix 51
AF6
D
101 111Right-handed alpha
Helix 52
AF7
D
123 139Right-handed alpha
Helix 53
AF8
D
150 160Right-handed alpha
Helix 54
AF9
D
160 172Right-handed alpha
Helix 55
AG1
D
186 200Right-handed alpha
Helix 56
AG2
D
214 219Right-handed alpha
Helix 57
AG3
D
240 244Right-handed 310
Helix 58
AG4
D
251 265Right-handed alpha
Helix 59
AG5
D
270 288Right-handed alpha
Helix 60
AG6
D
301 305Right-handed 310
Helix 61
AG7
D
307 311Right-handed 310
Helix 62
AG8
D
320 322Right-handed 310
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There are 8 sheets in PDB entry 5Z5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
204 210parallel
Strand 3
A
178 182parallel
Strand 4
A
293 297parallel
Strand 5
A
28 36parallel
Strand 6
A
18 25anti-parallel
Strand 7
A
324 333anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
92 97parallel
Strand 3
A
114 118parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
204 210parallel
Strand 3
B
178 182parallel
Strand 4
B
293 297parallel
Strand 5
B
28 36parallel
Strand 6
B
18 25anti-parallel
Strand 7
B
324 333anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
92 97parallel
Strand 3
B
114 118parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
248 250first strand
Strand 2
C
204 210parallel
Strand 3
C
178 182parallel
Strand 4
C
293 297parallel
Strand 5
C
28 36parallel
Strand 6
C
18 25anti-parallel
Strand 7
C
324 333anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 72first strand
Strand 2
C
92 97parallel
Strand 3
C
114 118parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
248 250first strand
Strand 2
D
204 210parallel
Strand 3
D
178 182parallel
Strand 4
D
293 297parallel
Strand 5
D
28 36parallel
Strand 6
D
18 25anti-parallel
Strand 7
D
324 333anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 72first strand
Strand 2
D
92 97parallel
Strand 3
D
114 118parallel
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