Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z5E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z5E entry

There are 2 chains in PDB entry 5Z5E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	ASN 505
B	ASP 2	LEU 509

There are 37 helices in PDB entry 5Z5E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	7	Right-handed alpha
Helix 2	AA2	A	29	49	Right-handed alpha
Helix 3	AA3	A	64	72	Right-handed alpha
Helix 4	AA4	A	72	77	Right-handed alpha
Helix 5	AA5	A	144	155	Right-handed alpha
Helix 6	AA6	A	161	178	Right-handed alpha
Helix 7	AA7	A	187	201	Right-handed alpha
Helix 8	AA8	A	249	253	Right-handed 310
Helix 9	AA9	A	273	275	Right-handed 310
Helix 10	AB1	A	278	296	Right-handed alpha
Helix 11	AB2	A	298	300	Right-handed 310
Helix 12	AB3	A	342	353	Right-handed alpha
Helix 13	AB4	A	376	387	Right-handed alpha
Helix 14	AB5	A	412	416	Right-handed 310
Helix 15	AB6	A	428	443	Right-handed alpha
Helix 16	AB7	A	456	467	Right-handed alpha
Helix 17	AB8	A	476	483	Right-handed alpha
Helix 18	AB9	A	501	503	Right-handed 310
Helix 19	AC1	B	3	7	Right-handed alpha
Helix 20	AC2	B	29	49	Right-handed alpha
Helix 21	AC3	B	65	71	Right-handed alpha
Helix 22	AC4	B	72	77	Right-handed alpha
Helix 23	AC5	B	144	155	Right-handed alpha
Helix 24	AC6	B	161	178	Right-handed alpha
Helix 25	AC7	B	187	201	Right-handed alpha
Helix 26	AC8	B	224	228	Right-handed 310
Helix 27	AC9	B	249	253	Right-handed 310
Helix 28	AD1	B	273	275	Right-handed 310
Helix 29	AD2	B	278	296	Right-handed alpha
Helix 30	AD3	B	298	300	Right-handed 310
Helix 31	AD4	B	342	353	Right-handed alpha
Helix 32	AD5	B	376	386	Right-handed alpha
Helix 33	AD6	B	412	416	Right-handed 310
Helix 34	AD7	B	428	443	Right-handed alpha
Helix 35	AD8	B	456	467	Right-handed alpha
Helix 36	AD9	B	476	483	Right-handed alpha
Helix 37	AE1	B	501	503	Right-handed 310

There are 14 sheets in PDB entry 5Z5E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	26	28	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	56	first strand
Strand 2	A	207	216	parallel
Strand 3	A	231	241	anti-parallel
Strand 4	A	368	375	anti-parallel
Strand 5	A	330	339	anti-parallel
Strand 6	A	318	326	anti-parallel
Strand 7	A	302	306	anti-parallel
Strand 8	A	257	261	parallel
Strand 9	A	267	271	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	179	182	anti-parallel
Strand 3	A	138	141	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	134	135	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	360	first strand
Strand 2	A	363	365	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	392	first strand
Strand 2	A	405	409	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	451	first strand
Strand 2	A	420	424	parallel
Strand 3	A	471	475	parallel
Strand 4	A	484	489	anti-parallel
Strand 5	A	495	499	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	26	28	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	56	first strand
Strand 2	B	207	216	parallel
Strand 3	B	231	241	anti-parallel
Strand 4	B	368	375	anti-parallel
Strand 5	B	330	339	anti-parallel
Strand 6	B	318	326	anti-parallel
Strand 7	B	302	306	anti-parallel
Strand 8	B	257	261	parallel
Strand 9	B	267	271	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	179	182	anti-parallel
Strand 3	B	138	141	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	B	132	135	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	360	first strand
Strand 2	B	363	365	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	397	first strand
Strand 2	B	400	409	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	451	first strand
Strand 2	B	420	424	parallel
Strand 3	B	471	475	parallel
Strand 4	B	484	489	anti-parallel
Strand 5	B	495	499	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z5E

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z5E