Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z5F entry

There is 1 chain in PDB entry 5Z5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 5Z5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
333 335Right-handed 310
Helix 2
AA2
A
470 472Right-handed 310
Helix 3
AA3
A
473 478Right-handed alpha
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There are 11 sheets in PDB entry 5Z5F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
295 297anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
23 27anti-parallel
Strand 3
A
36 42anti-parallel
Strand 4
A
49 55anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
328 329anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
83 90anti-parallel
Strand 3
A
95 101anti-parallel
Strand 4
A
112 113anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 126first strand
Strand 2
A
132 137anti-parallel
Strand 3
A
148 154anti-parallel
Strand 4
A
159 168anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 184first strand
Strand 2
A
187 194anti-parallel
Strand 3
A
202 208anti-parallel
Strand 4
A
216 217anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 184first strand
Strand 2
A
187 194anti-parallel
Strand 3
A
202 208anti-parallel
Strand 4
A
224 225anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 243first strand
Strand 2
A
249 256anti-parallel
Strand 3
A
270 278anti-parallel
Strand 4
A
284 286anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 315first strand
Strand 2
A
500 509anti-parallel
Strand 3
A
346 348anti-parallel
Strand 4
A
337 338anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 315first strand
Strand 2
A
500 509anti-parallel
Strand 3
A
373 380anti-parallel
Strand 4
A
437 444anti-parallel
Strand 5
A
448 454anti-parallel
Strand 6
A
461 468anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 367first strand
Strand 2
A
484 490anti-parallel
Strand 3
A
389 397anti-parallel
Strand 4
A
400 409anti-parallel
Strand 5
A
412 421anti-parallel
Strand 6
A
424 432anti-parallel
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