Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z5K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z5K entry

There are 2 chains in PDB entry 5Z5K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 39	PRO 418
B	GLY 264	PRO 329

There are 6 helices in PDB entry 5Z5K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	122	124	Right-handed 310
Helix 2	AA2	A	203	207	Right-handed 310
Helix 3	AA3	A	301	305	Right-handed 310
Helix 4	AA4	A	391	395	Right-handed 310
Helix 5	AA5	B	269	273	Right-handed 310
Helix 6	AA6	B	299	303	Right-handed 310

There are 16 sheets in PDB entry 5Z5K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	62	64	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	132	136	parallel
Strand 3	A	113	120	anti-parallel
Strand 4	A	71	76	anti-parallel
Strand 5	A	79	80	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	132	136	parallel
Strand 3	A	113	120	anti-parallel
Strand 4	A	126	128	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	97	99	anti-parallel
Strand 3	A	89	91	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	163	164	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	A	226	231	parallel
Strand 3	A	208	216	anti-parallel
Strand 4	A	170	175	anti-parallel
Strand 5	A	178	179	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	A	226	231	parallel
Strand 3	A	208	216	anti-parallel
Strand 4	A	219	222	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	159	first strand
Strand 2	A	197	199	anti-parallel
Strand 3	A	189	191	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	244	first strand
Strand 2	A	262	266	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	252	first strand
Strand 2	A	317	335	parallel
Strand 3	A	306	314	anti-parallel
Strand 4	A	270	275	anti-parallel
Strand 5	A	278	279	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	252	first strand
Strand 2	A	317	335	parallel
Strand 3	A	353	357	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	259	first strand
Strand 2	A	294	297	anti-parallel
Strand 3	A	287	290	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	A	407	416	parallel
Strand 3	A	396	404	anti-parallel
Strand 4	A	361	366	anti-parallel
Strand 5	A	369	370	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	350	first strand
Strand 2	A	384	387	anti-parallel
Strand 3	A	377	380	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	280	first strand
Strand 2	B	285	288	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	297	first strand
Strand 2	B	324	327	anti-parallel
Strand 3	B	308	311	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z5K

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z5K