Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z5M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z5M entry

There are 4 chains in PDB entry 5Z5M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	SER 299
B	VAL 5	SER 299
C	PRO 4	SER 299
D	PRO 4	SER 299

There are 43 helices in PDB entry 5Z5M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	12	Right-handed alpha
Helix 2	AA2	A	14	23	Right-handed alpha
Helix 3	AA3	A	29	39	Right-handed alpha
Helix 4	AA4	A	42	46	Right-handed 310
Helix 5	AA5	A	48	62	Right-handed alpha
Helix 6	AA6	A	64	74	Right-handed alpha
Helix 7	AA7	A	105	124	Right-handed alpha
Helix 8	AA8	A	135	147	Right-handed alpha
Helix 9	AA9	A	150	174	Right-handed alpha
Helix 10	AB1	A	208	212	Right-handed 310
Helix 11	AB2	A	249	257	Right-handed alpha
Helix 12	AB3	B	6	11	Right-handed alpha
Helix 13	AB4	B	14	22	Right-handed alpha
Helix 14	AB5	B	29	39	Right-handed alpha
Helix 15	AB6	B	39	45	Right-handed alpha
Helix 16	AB7	B	48	63	Right-handed alpha
Helix 17	AB8	B	64	75	Right-handed alpha
Helix 18	AB9	B	105	124	Right-handed alpha
Helix 19	AC1	B	135	147	Right-handed alpha
Helix 20	AC2	B	150	174	Right-handed alpha
Helix 21	AC3	B	208	212	Right-handed 310
Helix 22	AC4	B	249	256	Right-handed alpha
Helix 23	AC5	C	6	11	Right-handed alpha
Helix 24	AC6	C	14	23	Right-handed alpha
Helix 25	AC7	C	30	38	Right-handed alpha
Helix 26	AC8	C	39	44	Right-handed alpha
Helix 27	AC9	C	48	63	Right-handed alpha
Helix 28	AD1	C	64	75	Right-handed alpha
Helix 29	AD2	C	105	124	Right-handed alpha
Helix 30	AD3	C	135	147	Right-handed alpha
Helix 31	AD4	C	150	174	Right-handed alpha
Helix 32	AD5	C	249	256	Right-handed alpha
Helix 33	AD6	D	6	11	Right-handed alpha
Helix 34	AD7	D	14	22	Right-handed alpha
Helix 35	AD8	D	30	39	Right-handed alpha
Helix 36	AD9	D	39	44	Right-handed alpha
Helix 37	AE1	D	48	62	Right-handed alpha
Helix 38	AE2	D	64	75	Right-handed alpha
Helix 39	AE3	D	105	124	Right-handed alpha
Helix 40	AE4	D	135	147	Right-handed alpha
Helix 41	AE5	D	150	174	Right-handed alpha
Helix 42	AE6	D	208	212	Right-handed 310
Helix 43	AE7	D	249	256	Right-handed alpha

There are 10 sheets in PDB entry 5Z5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	182	184	anti-parallel
Strand 3	A	281	283	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	187	189	anti-parallel
Strand 3	A	286	289	parallel
Strand 4	A	292	296	anti-parallel
Strand 5	C	292	296	anti-parallel
Strand 6	C	286	289	anti-parallel
Strand 7	C	187	189	parallel
Strand 8	C	194	195	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	219	first strand
Strand 2	A	200	207	anti-parallel
Strand 3	A	241	248	anti-parallel
Strand 4	A	268	275	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	182	184	anti-parallel
Strand 3	B	281	283	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	187	189	anti-parallel
Strand 3	B	286	289	parallel
Strand 4	B	292	296	anti-parallel
Strand 5	D	292	296	anti-parallel
Strand 6	D	286	289	anti-parallel
Strand 7	D	187	189	parallel
Strand 8	D	194	195	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	219	first strand
Strand 2	B	200	207	anti-parallel
Strand 3	B	241	248	anti-parallel
Strand 4	B	268	275	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	233	first strand
Strand 2	C	182	184	anti-parallel
Strand 3	C	281	283	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	219	first strand
Strand 2	C	200	207	anti-parallel
Strand 3	C	241	248	anti-parallel
Strand 4	C	268	275	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	233	first strand
Strand 2	D	182	184	anti-parallel
Strand 3	D	281	283	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	219	first strand
Strand 2	D	200	207	anti-parallel
Strand 3	D	241	248	anti-parallel
Strand 4	D	268	275	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z5M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z5M